Clostridium sporogenes: CLSPO_c26430
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Entry
CLSPO_c26430 CDS
T03905
Symbol
rnjA2
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cld
Clostridium sporogenes
Pathway
cld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSPO_c26430 (rnjA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cld03019
]
CLSPO_c26430 (rnjA2)
Messenger RNA biogenesis [BR:
cld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLSPO_c26430 (rnjA2)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AKC63363
UniProt:
A0A7U4JQD3
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Position
complement(2893498..2895207)
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AA seq
569 aa
AA seq
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MRVDKERDKVKDRVKDKEKDKVKIIPLGGLNEIGKNLTVIEYKNDIVVIDCGLKFPDDDM
LGIDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLREVNVPVYGTKLTLGIVETK
LKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKI
DYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRI
IVATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAIN
KYPDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVIN
QLFKKGADVIYETLADIHVSGHACQEELKLMHTLLRPKYFIPVHGEYRHLKQHGELACQL
GLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGI
LTVVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAI
KTNIKDVLRGFLYEKTKRKPMILPIIMEI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagtggacaaagaaagagataaagtaaaagatagagtaaaagataaggagaaggat
aaagtaaagattattcctttaggcggcttgaatgaaattggcaaaaatttaactgttata
gaatataaaaatgatatagtagttatagattgcggccttaagtttccagacgacgatatg
ttagggatagatgtggttattcctgatataacttatcttaaaaagaatatcaataaagta
aaaggtatatttttaactcatggtcatgaagatcatataggagcattgccctatgttttg
agagaagtaaatgtaccagtatacggaactaagcttacattaggcatagtagaaaccaag
ttaaaagaacatggactactaagttctgtagagttaaaatgcataaagccaagggaaata
attagacttcaaaatgtttctgtggaatttataagaactagccacagtatagcagacaca
gtagctatagctatacatacacctttgggggttgttctccatacaggagactttaaaata
gactacacccctatagatggtcatgttacagatttagctagatttgctgaaataggcaag
cgtggagttatagctatgatggcagatagtacaaatgtagaaaggccaggctataccatg
tcagaaagtactgtaggggaagcttttctaaatatattctcaggggttaaaggaagaata
attgttgctacttttgcatctcacatccatagaattcaacaaataataagagctgctgaa
aaattcaaaagaaaagtagcagtttccggtaggagtatggaaaatattatggaagtagct
atgaagcttggatatataaaagcagaaaaaaatatatttataagcatagatgctataaat
aaatatccagatgaccaagtagttataataactacaggaagtcaaggagaacctatgtca
gctctttctagaatggcagcttcagagcataaaaaagtaaatataaagcctggcgataag
gtaattatatctgcaacacctattccaggtaatgaaaaattagtatctagggtgataaat
cagttatttaaaaagggtgcagatgtcatatatgaaacacttgcagatatacatgtatct
ggtcatgcatgccaggaagaacttaaacttatgcatacattactaagacctaaatatttt
atacctgttcatggagagtatagacacttaaaacaacatggagaacttgcttgtcaatta
ggattaccagaaaaccatgttatggtttcagatataggtgatgttatagaagtaagtagg
gaatgcattagaaaaaatggctctgtagtatcaggtcaagtatttgtagatggactaggt
gtaggagacgtagggaatatagtattaagagatagaaaacacttatctcaagatggtata
ttaacagtagttgttactatagaaaaggtttcaggttctgttattgcaggccctgatata
atatcaagaggttttgtttatgtaagagaatcagaggatttaatggaagaagctaaagat
ttagtaaaaaaagctctagaagaatgtgaaagaaatcatattacagaatgggctgcaatt
aaaacgaatataaaagatgttttaagaggattcttatatgaaaaaacaaagagaaaacct
atgatattaccaattataatggaaatatag
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