Clostridium sporogenes: CLSPO_c36500
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Entry
CLSPO_c36500 CDS
T03905
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cld
Clostridium sporogenes
Pathway
cld03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cld00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLSPO_c36500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cld03021
]
CLSPO_c36500 (rpoC)
03400 DNA repair and recombination proteins [BR:
cld03400
]
CLSPO_c36500 (rpoC)
Enzymes [BR:
cld01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLSPO_c36500 (rpoC)
Transcription machinery [BR:
cld03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLSPO_c36500 (rpoC)
DNA repair and recombination proteins [BR:
cld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLSPO_c36500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKC64340
UniProt:
A0A7X5SYL8
LinkDB
All DBs
Position
complement(3963958..3967494)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYRESIDKYGDDSFVAAMGAEAVKTLL
DEIDLEQTSVELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVQNGLAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVSVPTQDMVLGSYYLTMDKDGVKGEGKVFSCPEEVLMAYQCKEVDIHAKIKV
RLKKVIDGETIEGIIETTPGKIIFNESIPQDLGYIDRTIPENKLKLEVDFLVSKKTLGGI
ITKCYMKHGATKTSIMLDKIKAKGYHYSTIGAITISTSDMVVPESKRELLENTEKQVEKI
QKMYRRGFISEEERYEKVIDLWTKTTEDVANALMESLDSFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKILELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRQEDCGTEEGYEVSEIKEGNEVIEPLVERLSGRYPSEDIIHPTTGEIIVK
RNTYMDEDIAQKVSDAGIKKVKIRSVFTCKSKHGVCARCYGMNMGTSQKIHIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEET
KKKRTIIVITDDGEEVSYDIPFGSRIKVKNGDIISAGDEITEGSINPHDILRIKGVDGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIEDSGDTELLPGTMIDVFDFEEANR
EILEKGGEPAVGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKEN
VIIGKLIPAGTGMTRYRSIQINTDDENIEEDSIDSIEV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagttaaataattttgatgctttacaaataggtttagcttcaccagaaaagata
agagagtggtcaagaggtgaggttaaaaagccagaaactataaattatagaacactaaaa
ccagaaagagatggtttgttctgtgaaagaattttcggacctatgaaggattgggaatgc
cattgtggtaaatataaaagaataagatataagggcatagtttgtgatagatgcggagta
gaggttactaaggctaaagtaagacgtgaaagaatggggcatatagaacttgctgcccct
gtatctcatatatggtatttcaaaggaattccatcaagaatgggattaatattagatatg
tctccaagagctttagaaaaagttttatactttgcttcatatgtagtattagatccaaaa
gaaacaccccttttaaagaagcaattattaaatgaaaaagagtatagagaatccatagat
aaatatggagatgacagttttgttgcagcgatgggtgcagaagctgtaaagactctttta
gacgaaatagatttagaacaaacatctgtggaacttaaagaagagttaaaaacaagtaca
ggacaaaagaaaataagaataataagaagattagaggtagtagaatcctttagaaaatca
ggaaatagacctgattggatggttatagatgttataccagtaattccacctgatttaaga
ccaatggttcaattagatggaggaagatttgctacatctgatttaaatgatttgtataga
agagttataaatagaaataacagattaaaaaaattgttagacttaggggctccagacata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtggatgctctaatagataatggt
agaagaggaagaccagtgacaggaccaggaaatagacctcttaaatcattatcagatatg
ttaaagggtaaacaaggtagatttagacaaaacttgctaggaaagcgtgttgactattca
ggccgttcagttatagttgtaggaccagaattgaaaatgtatcaatgtggtttaccaaaa
gaaatggctcttgaattattcaaaccatttgttatgaaaaaacttgttcaaaatgggtta
gcacataatataaaaagtgctaagagaatggtagaaagagttcaacctcaagtttgggat
gtattagaagaagttatttctgatcatccagtattattaaatcgtgcccctactcttcac
agattaggaattcaagctttccaacctgtattagtagaaggaagagcaattaaacttcat
ccacttgtatgtacagcttataatgcagactttgatggagaccaaatggctgttcacgta
cctttatcagtcgaagctcaagcagaggcaagattcctaatgctagcagcacataatata
ttaaaaccatctgatggtaagccagtgtctgtacctacacaagatatggttttaggttct
tattacttaacaatggataaagatggagtaaagggtgaaggaaaagtattttcttgtcct
gaagaagtactgatggcatatcaatgcaaagaagttgatatacatgctaaaataaaagta
agattaaagaaagttatagacggagaaactattgaaggaataatagaaacaacaccagga
aaaattatatttaatgaatctataccacaggatttaggatatattgatagaacaatacct
gaaaacaagttaaaattagaagtagattttcttgtatctaaaaagacattaggtggaata
attaccaagtgttatatgaaacatggtgcaacaaaaacttctataatgttagataaaatc
aaagcaaaaggatatcattattctactataggagctattactatttctacttcagatatg
gtagtgccagagtctaagagagaactacttgaaaatacagaaaaacaagtagaaaaaata
caaaaaatgtatcgtagagggtttatatctgaggaagaaagatatgaaaaagttattgac
ctttggactaaaacaacagaggatgtagctaatgctcttatggaaagtttggatagtttt
aatcctatatatatgatggctgattcaggagccagaggttctaaaagtcagataaagcaa
ttagcaggtatgagagggcttatggctaatccatcaggtaaaattctagagttaccaata
aaagcttcttttagggaaggtctagatgtgttagagtattttatatcaacacacggtgct
agaaaaggtaatgcagatacagctttaaaaacagctgactcaggatatttaactagaaga
cttgttgacgtttcacaggatgttatagtaaggcaagaagattgtggaacagaagaagga
tatgaagtatctgaaataaaagaaggaaatgaagtaatagagcctttagttgaaagatta
tcaggcagatatccttcagaagatattattcatcctactacgggagaaataatagtaaaa
agaaacacatatatggatgaagatatagctcagaaggtatcagatgcaggaattaaaaaa
gttaaaataagatctgtatttacttgtaaatcaaaacatggtgtttgtgctagatgttat
ggtatgaatatgggtacttcacaaaaaattcatataggtgaagcagttgggattgttgct
gctcaaagtataggagaaccaggaactcagcttacaatgagaacattccatacaggtggt
gttgctggagctgatataactcaaggtcttccaagagttgaagagctttttgaagctaga
aaacctaaaggattggctattgtaagtgaagtatcaggaacagtaaaaatggaagaaact
aagaaaaaaagaacaataatagttataactgatgacggtgaagaagtttcctatgatatt
ccatttggttctagaataaaagtcaaaaatggagatattatatcagcaggagatgaaata
acagaaggttcaataaatccacatgatattttaagaataaaaggtgttgacggagttaaa
aattatcttttatcagaagttcaaaaagtttatagactacaaggtgttgatataaacgat
aaacatcttgaagtagttataagacaaatgacaagaaaaataaaaattgaagattcagga
gatactgaattattacctggaacaatgatagatgtttttgattttgaagaagccaataga
gaaatattagaaaaaggtggagaaccagcagtaggtagaatagctttattaggaataaca
aaagctgcactggctacagattcattcctttcagctgcgtcattccaagaaactacaaga
gttcttacagatgctgctatcaaaggtaagattgatccgctattaggcttgaaagaaaat
gtaattattggtaagttaatacctgcaggtacaggtatgacaagatatagatctattcaa
ataaatactgatgacgaaaatattgaagaagattccatagattcaatagaagtatag
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