Cellulosilyticum lentocellum: Clole_3555
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Entry
Clole_3555 CDS
T01448
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cle
Cellulosilyticum lentocellum
Pathway
cle03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cle00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Clole_3555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cle03021
]
Clole_3555
03400 DNA repair and recombination proteins [BR:
cle03400
]
Clole_3555
Enzymes [BR:
cle01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Clole_3555
Transcription machinery [BR:
cle03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Clole_3555
DNA repair and recombination proteins [BR:
cle03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Clole_3555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADZ85239
UniProt:
F2JT20
LinkDB
All DBs
Position
complement(3868617..3872246)
Genome browser
AA seq
1209 aa
AA seq
DB search
MSNLDQSIYFEQIKIGLASPEKIREWSRGEVKKPETINYRTQRPERDGLFCERIFGPSKD
WECHCGKYKRIRYKGVICDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLI
LDITPGKLEKILYFAAYIVLDPKDTGLEYKEILGEKEYREAEEKYGPGSFVAEMGAEAIK
KLLSDIDLEAESIDLKAQLKTTTGQKRIRVIKRLEVIEAFRLSDNKPEWMIMDVVPVLPP
DLRPMIQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVRNEKRMLQEAVDALI
DNGRRGKPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPSLKIYQCG
LPKEMAIELFKPFVMKKLVSDGIAHNIKNAKHMIERLQPQVWDVLEEVIREHPVMLNRAP
TLHRLGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAECRFLLLAP
NNLLKPSDGAPVAVPSQDMVLGTYYLTLKKDDEEYATEGEVGALTDKDEVEKVTKEDGTV
VWVKRQIGAHKIFHDEKEALLAYDNKVITLHAPIKVRRTLMINGEEQMGLTDTTAGRIIF
NEIVPQDLGFVDRSKEENTFKYEVDFLVGKKELGKLIKKCINTHGATETAIFLDNVKDLG
YKFSTRGSLTVSVSDMVVPEEKQGFLDEAQAEVDHVTKLFRRGLMTDEERYNKVIQAWNK
ANDKITKALLDNLGKYNNIYMMAHSGARGSTNQIKQLAGMRGLMASTSGRTIELPIKANF
REGLSVLEYFISAHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCHEHAPNEPI
PGMWVSAYKDGAEVIEPLNERLAGRVAADDIVHPETGEVIVPANQMIKPNQADYIEEIGI
QKVRIRNVLRCKSKIGVCAKCYGANMSSGNQVRIGESVGIIAAQSIGEPGTQLTMRTFHT
GGIAGDDITQGLPRVEELFEARKPKGLAIISEINGVVTITDNKKKREVTVTDNETGNVKS
YVIPYGSRIKVQDDMYVEAGDELTEGSVNPHDILKVKGILGVQHYMIQEVQRVYRLQGVD
INDKHIEVIVRQMLKKIKIEESGDTGLLPGSSIDILEFEEVNKKAEAEGLEPAEGKNVLL
GITKASLATESFLSAASFQETTKVLTEAAIKGKTDPLIGLKENVIIGKLIPAGTGMDRYR
KLDIEMVTE
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacttggatcaatctatctattttgaacaaattaagataggactggcttcccct
gaaaaaatccgcgagtggtcacgaggagaagtaaaaaaaccagaaacaattaattaccgt
acacaaagaccggaaagagatggtctcttctgcgaaagaattttcgggcctagcaaagac
tgggaatgtcactgtggaaagtataagagaattagatataaaggcgttatttgtgaccgt
tgtggagtagaggttacaaaagctaaagttagacgtgagagaatggggcatattgaactg
gctgccccagtatctcatatttggtactttaaaggtattccaagtagaatgggtcttatc
ttagatatcactccaggtaaacttgagaaaattttatatttcgcagcttacattgtacta
gacccaaaagatactgggcttgagtataaagaaatcttaggcgaaaaagaatacagagaa
gcggaagaaaaatatggcccaggctcattcgtagcagaaatgggtgctgaagctattaag
aaattactttctgacattgatttagaagcagaaagtattgatcttaaggctcaacttaaa
acaacaacaggtcaaaagagaattcgtgttattaaacgtcttgaagttattgaagcattc
cgtttatcagataataaacctgaatggatgattatggacgttgttccagttcttccacct
gaccttagacctatgattcaacttgatggtggacgttttgctacatctgaccttaatgac
ctctatagaagagttattaaccgtaacaatcgtcttaaaagattacttgatttaggtgca
cctaatattattgtaagaaatgaaaaacgtatgttacaagaagctgttgatgcccttatt
gataatggtcgtcgtggtaaaccagtaacaggacctggtaacagaccacttaaatcactt
tcagatatgcttaaaggtaaatcaggacgtttccgtcaaaacttacttggtaaacgtgtt
gactactcaggacgttcggttatcgtagttggaccaagccttaaaatttatcaatgtggt
cttccaaaagaaatggcgattgagctcttcaaaccatttgttatgaaaaaattagtatct
gatggtattgcacacaatatcaaaaatgctaagcacatgattgaaagattacaaccacaa
gtttgggatgttttagaagaagtaatcagagaacatccagtaatgcttaaccgtgcacca
acacttcacagacttggtattcaagcatttgaaccaatcttagttgaaggtcgtgcgatt
aaacttcacccacttgtatgtacagcttacaacgctgacttcgatggtgaccaaatggct
gttcacgttcctttatcagttgaagcacaagctgaatgtagattcttacttttagcacca
aacaaccttcttaaaccttctgatggagcaccagttgcagtaccatcacaagatatggtt
cttgggacatactatttaacacttaaaaaagatgacgaagagtatgctactgaaggagaa
gtaggggctcttactgacaaagatgaagttgagaaagtaacaaaagaagatggcacagta
gtttgggttaaacgtcaaattggtgcgcacaaaatcttccatgatgaaaaagaagcatta
cttgcttatgataataaagttattacacttcatgcaccgattaaagtaagacgtacttta
atgattaatggtgaagaacaaatgggtcttacagatacaactgcaggacgtatcattttc
aacgaaatcgtaccacaagaccttggttttgtagatagaagtaaagaagaaaacacattt
aaatatgaagtagatttcttagttggtaaaaaagaacttggtaaattaatcaagaaatgt
atcaatacacatggtgctactgagacagctatcttccttgataatgttaaggatcttggt
tacaagttctctacaagaggatcacttactgtatctgtatcagatatggttgttccagag
gagaaacaaggcttcttagatgaagctcaagcagaagtagatcatgtaacaaaactcttc
agacgtggtcttatgacagatgaagaacgttacaataaagttatccaagcatggaataag
gctaatgataagattacaaaagcccttcttgataatcttggtaaatacaataatatctac
atgatggcacactctggtgcccgtggttctactaaccagattaaacagttagctggtatg
cgtggtctgatggcatctacatcaggtcgtacaatcgagcttcctattaaagctaacttc
cgtgaaggtctttctgttcttgaatacttcatctcagcgcatggtgcgcgtaaaggtctt
gccgatacagcacttagaacagctgactctggataccttacacgtcgtcttgttgacgta
tctcaagacgttatcattcgtgaggaagattgtcatgagcatgcaccaaatgaaccaatc
ccaggtatgtgggtgtctgcatacaaagatggtgcagaagttatcgaaccactaaatgaa
cgtttagctggtcgtgtagcagctgatgatattgttcacccagaaacaggtgaagtaatt
gtaccagcaaatcaaatgattaaaccaaaccaagctgattatatcgaagaaatcggtatt
caaaaagttcgtatccgtaatgtccttagatgtaaatctaagattggtgtttgcgctaaa
tgttacggtgccaacatgtcatctggtaaccaagtaagaattggtgagtctgttggtatt
attgcagctcaatctatcggtgaaccaggtacacagcttacaatgcgtactttccataca
ggaggtattgctggagatgatatcacacaaggtcttcctcgtgttgaagagttatttgaa
gcacgtaaaccaaaaggacttgcaatcatctctgaaattaatggtgttgttacaattact
gataacaagaaaaagcgtgaagttacagtaactgataatgaaacaggcaatgtaaaatca
tatgtaatcccttatggttcaagaattaaagtacaagatgatatgtatgttgaagcaggg
gatgaacttacagaaggtagtgtaaatccacatgatatccttaaagttaaaggtatcctt
ggtgtacaacattacatgattcaagaagttcaacgtgtataccgtcttcaaggtgtagat
atcaacgataagcacatagaggttatcgttcgccaaatgcttaagaaaattaagattgag
gaaagtggagatactggattacttccaggaagctctatcgatatcttagaattcgaagag
gtaaataaaaaagcagaagcagaaggtttagagccagcagaaggtaaaaatgtattactt
ggtattacaaaagcttctcttgctactgaaagcttcttatcagcagcttccttccaagaa
acaactaaagttcttacagaagcagcaattaaaggtaaaactgacccacttatcggtctt
aaagaaaatgttatcattggtaaacttattccagccggtacaggtatggatagatatcgt
aaactagatattgaaatggtaacagaataa
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