Cimex lectularius (bed bug): 106662583
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Entry
106662583 CDS
T05603
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
clec
Cimex lectularius (bed bug)
Pathway
clec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106662583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clec03019
]
106662583
03041 Spliceosome [BR:
clec03041
]
106662583
03009 Ribosome biogenesis [BR:
clec03009
]
106662583
03016 Transfer RNA biogenesis [BR:
clec03016
]
106662583
Enzymes [BR:
clec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106662583
Messenger RNA biogenesis [BR:
clec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106662583
Spliceosome [BR:
clec03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106662583
Complex C
U4/U6.U5 tri-SnRNP related factors
106662583
Ribosome biogenesis [BR:
clec03009
]
Eukaryotic type
Pre-60S particles
Helicases
106662583
Transfer RNA biogenesis [BR:
clec03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106662583
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
GAS
Motif
Other DBs
NCBI-GeneID:
106662583
NCBI-ProteinID:
XP_014242264
UniProt:
A0A8I6RBQ7
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MDMFNVFEQSSSNRPDQENGKQENRLAVLLGKKREAGKPEETKTKKKRPSERKEEERAME
EDIKQEDFIEPMNSVEETKFKIDQARCDFLSTSSVESPHIKIHVVEALELCLHEVAIPPG
IPYKPLIRPKTLLKEYKFLLDPFQKEAIMCIENDESVLVSAHTSSGKTVVGEYSILKSLK
LKQRVIYTTPIKALSNQKYREFQEEFQDVGLITGDVTINPSAGCLIMTTEILRNMLYRGS
VIIKEVSWVIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVAHIH
NQPCHVVYTDYRPTPLQHYIFPVGGDCLHLVVDEKGVFNERNFELAMKLISNPGLVQKTE
NKVKKGRSNEGKETSCLKIVRMVMEKNLAPAIIFSFSKKDCEVYAMQIAKLDFNTSEEKR
LVDEIFQNAMDILSEEDRALPQVENVLPLLRRGIGIHHGGLLPILKETIEVLFSEGLIKA
LFATETFAMGLNMPARTVVFTATKKFDGHESRSITSGEYIQMSGRAGRRGLDDKGTVIVM
MEEMFGPLVGKSLFQGKADALNSAFHLSYNMILNLIRVDDINPEYLLDRSFFQFQNHANI
PVLKTELKQVEEKLANIEIKHETDVSSYDRLVKEREQLYKEYVAYIHNPDVIQQFLRPGR
LVRIKEMKKEEDFGWAMLLSFKVINSKKKNPAQEPATLTIDVLLMIDPSSSNTDPKKCPK
GVTGKLCVITMPHTNIMELSSVCVVLPKDLRTQDNMATASMAYKEVEERFKGKFPILDPV
KNMRIQQERFLELDQHIKNLTKRIENHKANQYSDLDKLLSVLDEKNKLLQNKNNIKTEME
KCLSLLHMEELKSRKRVLRRLEFCTETDVIELKGRVACEISSADELLLTEMLFAGIFNDL
SPQNATALLSCFVCEEKGTNNSKVPDELIAPLRHTKELAKRILNVCVEAKLDIDKSGYLE
QVRPFLAEVVLAWCNGVSFMEVCRISDTFEGNIIRCLRRLEELLRQFIQAAKTLGNQDLE
IKFNEGIRMIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggatatgttcaacgttttcgagcagagctcttctaacagaccggaccaagaaaatggt
aagcaggagaacaggttggccgttctactcgggaagaagagggaggccggaaaaccggaa
gagacgaagaccaagaagaagaggccctctgagaggaaagaagaagagcgggccatggaa
gaagatatcaagcaggaggatttcattgaaccgatgaactcagttgaagagacaaagttt
aaaatcgaccaggccaggtgtgattttctttcaacatcatccgttgagagtcctcacatc
aaaattcatgtcgtagaagcccttgagctatgccttcatgaagtcgccatccctcccggc
ataccgtacaaaccgttaatcaggccgaaaactctcttaaaagagtataaatttcttctc
gatccttttcaaaaagaagcgatcatgtgtatagaaaatgacgagtcggtactagtttct
gcgcacacgtcatcgggaaaaacagtcgttggcgagtacagtatactcaagtcattgaaa
ttaaaacagagggttatatacacgactccgatcaaagctcttagtaatcagaaataccga
gagtttcaggaggagtttcaggacgttgggcttataaccggtgatgtgacgatcaaccct
tcggctggttgtctcataatgacgactgaaattttgcgtaatatgctttatcgtgggtcc
gtcattatcaaggaagtgtcgtgggtcatctttgacgaaatccactatatgagggataaa
gaacgtggtgttgtctgggaagagacgcttatattgttacctgacaatgtacattacgta
tttctttccgctacgatcccaaacgctcgacagtttgcagagtgggtcgctcatatacac
aaccaaccttgtcatgtcgtctacacagattaccgccctacacctttgcagcattacata
ttccctgtcggtggagattgtttacaccttgttgttgatgagaagggcgtttttaatgaa
agaaactttgagcttgcaatgaagctgataagcaacccagggctggtacagaaaacagag
aataaagtaaaaaagggaaggtcgaatgaagggaaagaaacaagctgtttaaaaattgta
agaatggtcatggagaaaaacctcgcacctgcgattatattctctttcagtaaaaaggat
tgtgaagtttatgccatgcagatagcaaagttagactttaatacgtcagaagagaaacgc
ttggtggatgaaattttccaaaacgcaatggacattttatcagaagaagatagagccttg
ccacaggtggaaaatgtacttccccttttgcgaagaggcataggaatccatcacggtgga
ctccttcccatactaaaagagacgattgaagtgctgttttctgaaggtctgataaaggca
ttatttgccacggaaacttttgcaatgggcctcaacatgccggcaagaactgttgtgttc
acagccaccaaaaagttcgacggacacgagagccgtagtatcacttcaggagagtatatt
caaatgtctgggcgtgctgggagaagaggcctggatgataaagggactgttatcgtcatg
atggaggaaatgtttggacctcttgttggcaagagtctctttcaaggaaaagctgatgca
cttaattctgctttccatctcagctacaacatgatccttaacttgatcagagtcgacgac
atcaaccccgagtatcttttggataggagttttttccagtttcaaaaccatgcaaacatc
cctgttctaaaaacagaattaaaacaggtcgaggaaaagctcgctaatatcgaaatcaag
catgaaacagatgtttcaagctatgaccgtcttgttaaagaaagggaacagttatataaa
gagtatgtagcttatatccacaatccagatgtcattcaacagtttttacgacctgggaga
ttggtaaggataaaagaaatgaaaaaagaagaagactttggatgggctatgcttctcagc
tttaaagttatcaattcaaagaaaaagaatcctgcccaggaacctgcaacactcactatt
gatgtattgctgatgatcgatccctcatctagcaatacagacccaaagaaatgtccaaaa
ggagtgacaggaaagctgtgtgtcataactatgccgcacaccaatataatggagcttagt
agtgtatgcgttgttttgcctaaagatctgagaactcaggacaacatggcaaccgcttct
atggcgtataaagaagtagaggagcggttcaaaggaaagttcccaatattagacccggtg
aaaaacatgaggattcaacaagaaaggtttttagaattagatcagcatatcaagaaccta
accaagagaatagaaaaccataaagcgaaccagtattccgatttggataaactactttca
gttttagatgaaaaaaataaattattacagaataaaaataacattaagacagaaatggaa
aaatgcctttcgctcttacacatggaggagctgaaaagtaggaaaagggtcctgcgtcga
ttggaattttgcacagagaccgacgtgattgaactcaagggaagagtagcttgtgaaata
agcagtgcggatgaacttctgctcactgaaatgctctttgctggtatatttaatgatctc
agtccccagaatgccactgccttgctcagctgttttgtgtgtgaagaaaaagggactaac
aactccaaagtacctgatgagttgatagctccgctaaggcacaccaaggagctcgccaaa
cggatattgaacgtttgcgtcgaggctaagcttgacatagacaaatccggttatctggag
caggtccggccgttcctagccgaagtcgtcctggcatggtgcaacggtgtatcctttatg
gaagtctgcagaatttctgatacatttgaaggcaacattatacgctgtctgagacggctt
gaagagcttttgagacaatttattcaagctgcaaaaactctaggaaaccaagaccttgaa
ataaagttcaatgaaggcatccgcatgatcaaacgggacattgtatttgctgcaagtttg
tacctgtaa
DBGET
integrated database retrieval system
