Clavelina lepadiformis (light-bulb sea squirt): 143444148
Help
Entry
143444148 CDS
T11416
Name
(RefSeq) cholesterol transporter ABCA5-like
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
143444148
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
clep02000
]
143444148
Transporters [BR:
clep02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
143444148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
ABC2_membrane
AAA_22
RsgA_GTPase
AAA_29
SMC_N
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
143444148
NCBI-ProteinID:
XP_076799400
LinkDB
All DBs
Position
1:9263290..9280296
Genome browser
AA seq
1684 aa
AA seq
DB search
MASLLWRQIKVLLYRNFYLKLRTKSQTIQEILLPIYFVVLLVVLKLAAYKPDSLPSLPNE
SNRSLSSFQLPDNTVFYVAPNFTEAESLINKVVTEVQSGSSFRMFASLEEMDKAYKDNPT
PANQNLVGVYFPNNSISAYALRFEYYQSAGSYPFDFSETGCRDTNDSFSSITCQANNYLS
TGFTHLQTVIDTEIIKMYNPSYIEPDVVVQRMPKPGTISNGVVFRVITSLYLVMAMNPYL
VFLLVNVVIEKQRKIKEAMKMMGLSNVALWLSWAITYGLIILVMTLVMTIIAVFGQLFPN
SNFLIVFLLFYLYGLSLEMFSFLLTTFFSNARTAGAIGSVLSILLGVLYLIFAFTNISQT
VAWALSLLSPTAFAIGVDQISTLEIIGEGAQFSNLWKSGNGSYPLAIPLIMLPVDIILYF
FLTLYFDNVVPGEYGQRNSIFFCFMPSFWFPSKYRITLGHQASNGNNCDYIEPISDDLKG
KEAIRIQNITKVYKTGSYVSGDMKSTTAVNNFSLDIYEGQITALLGHNGAGKTTLFNILT
GFVDATDGKATVFNYDVSNSSHMALIRQMTGVCPQHNILFDVLSVREHLHVFAGIKGINS
NDVATEVQRVVKLIGLEDQIETFAKDLSGGQKRKLSVGIAIMGDPKILILDEPTAGMDPY
SRRQLWDLLRSRKEGRITLLTTHFMDEADILADRKAIISKGKLRCVGSSLFLKNRFGIGY
HLGVVTKTADGEHVVSTRVKSHIEGSELQRSTGYELGYTLPITQVDQFAGLFEDLEKNGK
ELGVQSFGVSMTTLEEVFLKIGEEEEGEGDAAAHEDNGSTTGLIRNSVTSPGKYQSIVEG
HTNPVYGESSKNEATRESKEIPISAKSVFDPTAYKAGKPSQKDVYFSLVKKQILVYWRNP
GIIVFGFILPIGLAIGSAAVLNLQTTVDDYNDPPLVNVTLPRNPDYTRNTPFLYKSSTGE
SLDNFVNAAIEFGVPVEESNLTDFLKVPNVFSYVAADIFQFNESQLFYKALYNTSAVHSL
PSILNLMSQTILRNINETARSIITYNKRWPALTTPLVFNGGAFGGTLMAALAVVMSTGLS
AINPVKERELKIKGQLRVSGVTFELYWLSAMLVDYCWFLCIAIALLIGLGAFNVSAYIAT
GAVLSLIFMLLGWGASCILISYCANFAFTKFETAQTVWPNIIQLLALFPYIIVSLVDQLG
SPDIALYLNVVFVILIPYYVGFSGIFYISKLYNYYATTRPGVPVPAAAYFDWSAPMIPFS
ILMAYIHVVVFYFLLKIIDVRSGGGKVSDVFKFLNRKNSEVRDISAYEEEELGEGDTDDD
VVNESRKVQLIANSQNLDEQQPVVLVHKLRKEFVKRAKKQTCKKAKEEDKVKVAVGNLSL
SVYPGEVLGLLGPNGAGKTTAISVITADNGPTRGKVFVSGHDIQSSLSAAYQEMGYCSQD
NPLWENLTIKEHLELYATTRGIKENDVKRTIDSFVDALEIREHIDKRAKELSGGTKRKLC
FAMAMLGDPQVVLLDEPSTGMDPKTKRFMWDTISSAFEGTTRGCILTTHYMDEADALCSR
VAIMVLGRLKCIGSTQHLKSKFGQGYILEIKLKKELNKEDNSLHQFVTRIFENVPEPECF
SHRYVYKIPQESVQSLSSVFSELEQNKQDLCIEEYSFSQSTLEQVFLQFAREQDERDEEQ
NNAM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggcctctttgttgtggaggcaaattaaagtattactctatcgtaacttttatctgaag
ttaaggacaaaatctcagacaatacaggaaatcttgcttccaatatactttgtggtactg
cttgtggtgttgaaactcgctgcatacaaacctgattcattaccaagcttgcccaatgaa
agcaacagaagcctatcttcatttcaactcccagataacactgttttttatgttgcacca
aattttacggaagctgaaagcttgataaacaaggttgtgactgaggtgcagtctggttca
tcattccgcatgtttgcatctttggaagagatggataaagcatataaagataatccaacg
cctgctaatcagaatctggttggtgtgtactttcccaataactctatatcggcatatgct
ctacgttttgaatattatcaaagtgctggatcttatccattcgatttttccgaaactgga
tgtcgagacaccaatgacagtttttcaagtattacctgtcaagccaacaactacttgtcg
actggatttacacacctgcaaactgttatcgacacagaaataattaagatgtataatcca
agttacattgagccagatgttgttgttcaaaggatgcccaaaccagggaccatttccaat
ggagttgtatttcgagttataacatcactctatcttgttatggctatgaacccatatctg
gtatttctgctggtcaatgtagttattgaaaaacaacgaaaaatcaaagaagcaatgaaa
atgatgggtctaagcaacgttgccttgtggttatcttgggccatcacctatggcttgatt
attcttgtaatgaccttggtcatgaccatcatcgctgtgtttggacaacttttccccaac
agcaactttttgattgtatttctactcttttatctttatggcttgagtctggaaatgttt
agcttccttttgacaacattcttctcaaacgcccgaacagctggggcaattggttctgtg
ttgtcaatcttactaggcgttttatatctgatttttgcatttacaaacatttcccagacc
gttgcatgggcactgagtctcctgtcacccacagcatttgcgattggtgtagaccagatt
tccactttggaaattatcggggaaggtgcacaattttctaatttgtggaaaagtggaaac
ggctcatacccccttgctataccactgatcatgctgccagtcgatattatactttacttt
ttcctgacactttactttgataatgtagttccaggagaatatgggcagagaaactcaatt
tttttctgctttatgccttcgttttggtttccatcaaaatatcgcattactcttggccat
caggccagtaacggcaacaactgtgattacattgaacctatatcagatgatttaaagggc
aaagaagcaatcaggatccaaaacatcacaaaagtgtataaaacaggcagttatgtctct
ggcgatatgaagtccactacggctgtgaataatttctctttggacatttatgaaggccag
atcaccgctttgctgggtcataatggtgccggaaaaacaacacttttcaatatattaact
ggttttgttgatgctactgatggcaaagcaacagtcttcaattatgacgtatccaacagc
tcacacatggctttgataagacaaatgacaggagtttgtccccagcataacattttgttt
gatgtactttctgtaagagaacatttgcatgtttttgctgggattaaaggaataaattcc
aacgatgttgcaacagaagtgcagcgtgtggtcaaacttattggcttggaagaccaaatt
gaaacttttgcgaaagatttatccgggggacaaaaacgaaagctttctgtaggaattgca
atcatgggtgatccaaagattttaatattggatgagccgacagccggaatggatccttat
tctcgtcgccagttgtgggatctattgagatcgagaaaagaaggcagaataacgttgctt
accactcatttcatggatgaagctgatatcttggctgatcgcaaagcaattataagcaaa
ggtaaactgcgttgcgttggatcgtcgctcttcttgaaaaatcgatttggcattggatat
catctcggagtagtcacaaaaactgctgatggtgaacatgtggtcagcacacgcgtcaag
tctcatattgagggatcagaactgcagaggtcgactgggtatgagcttggttacacactc
cccattacccaagttgaccagtttgcaggcctttttgaagatcttgaaaaaaatggtaaa
gagttgggagtacaaagttttggtgtttccatgacaacattggaggaagtatttttaaaa
ataggggaggaagaagaaggggaaggagatgcagcagctcatgaagacaatggaagcaca
actggtctgatcagaaactctgtcacttccccaggcaaatatcaatcaattgtagaaggt
catacaaatcctgtatatggggaaagcagtaaaaatgaggcgactcgtgaaagtaaagaa
atacctatttctgcgaaatctgtttttgacccaactgcttacaaggcgggaaagccttca
caaaaagatgtatacttttccctggtaaaaaaacaaatcctggtttactggcgaaaccct
ggcataattgtttttggttttatccttcctattggcttagcaatcggtagcgcagctgta
ctgaaccttcagacaactgtcgatgattataatgatccacctctagtgaatgttacgttg
cctcgaaaccctgactatacccggaatacacctttcctatacaagagttccacgggtgaa
tcgttggacaattttgtgaatgccgccatagagtttggtgtcccagtggaagagagtaat
ttgacagattttctaaaagtcccaaacgttttctcatatgttgctgctgatatatttcag
tttaatgaatcacagcttttctacaaagcactttacaacacttcggccgtacattctctc
ccgtccatcctcaacctgatgagtcaaaccattctgcgcaacattaacgaaactgcaaga
tctataataacttacaacaaaagatggccggccttgactaccccacttgtatttaatggt
ggtgcttttggtggcaccctcatggctgcattggctgttgtcatgtcaactggactatca
gctatcaaccctgtcaaagaaagagagttaaaaataaaaggtcagcttcgtgtgtcaggg
gtcacgtttgagctttactggctctctgcaatgttggttgactactgctggtttctttgc
attgcaattgctttactcattggattaggggcgtttaatgtttcagcttatattgctacc
ggtgctgttttatcattgatcttcatgttacttggttggggagcttcttgcattctcatt
tcgtattgtgctaattttgcctttaccaagttcgaaacggctcagactgtttggcccaat
atcattcaattgcttgccctcttcccgtatattatcgtatctctcgtagatcagctcggc
tcaccagatattgctctttatctcaacgttgtctttgtcattttaataccatattatgtt
ggattcagcggcattttctacatatcaaagttgtacaactattatgcaactacaagacca
ggtgtgccagttccagctgctgcttattttgattggtcagcaccaatgatccctttctcg
atacttatggcgtatattcatgttgtcgttttttactttctactgaaaattattgatgta
agaagtggtggaggcaaagtttctgatgtgttcaaatttttaaacaggaaaaattcagag
gtccgtgacatcagtgcgtatgaggaggaagaattgggtgagggggacacagatgatgat
gttgtgaatgagagcaggaaagtccaactgatcgctaacagtcaaaacttggatgagcag
caaccagttgtgttggtccataaactgcgaaaggaatttgtcaaacgagctaagaagcaa
acgtgcaagaaggccaaagaagaagacaaagtgaaggttgcagtaggcaacttatctcta
tccgtctatcctggtgaagtgcttggcttgctaggtccaaacggtgcaggcaaaacaact
gcaataagcgtgatcacagcagataatgggccaaccagaggcaaggtgtttgtgtcggga
catgacatacagtcaagcctatcagctgcgtatcaggaaatgggctactgctcccaggat
aatccattgtgggagaacctcaccataaaagaacaccttgagctgtacgcgacgactcgc
ggcataaaagaaaacgatgtcaaacggacgattgacagcttcgttgacgccttggagatt
cgtgaacacattgataagcgcgcaaaggagttatctggcggcaccaagcgaaaattatgc
ttcgccatggcgatgttgggcgatccacaagttgttttgctcgacgaaccctctactgga
atggacccaaaaacaaagcgattcatgtgggacacgatcagcagcgcattcgaaggaacg
accagaggctgcatcctcacaactcactacatggatgaagctgacgctttgtgctctcga
gtcgcgataatggttcttgggcgattgaagtgcattggatcgactcagcatctgaagagc
aagtttggtcagggatacattctcgagatcaaattgaaaaaagaactgaacaaggaagat
aactcacttcatcagtttgttactagaattttcgagaatgttccggaaccagaatgtttc
agtcatcgatatgtatacaagataccacaggaaagcgtgcagtcactctcatccgtgttt
tctgagcttgagcaaaacaaacaagatctgtgcatcgaggaatacagcttcagccagtcc
acactggaacaggtcttcctgcagtttgcacgagaacaggatgaaagagatgaggagcag
aataacgccatgtga
DBGET
integrated database retrieval system
