Clavelina lepadiformis (light-bulb sea squirt): 143445231
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Entry
143445231 CDS
T11416
Name
(RefSeq) RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clep03009
]
143445231
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
90S particles
Other 90S particles
143445231
Pre-60S particles
Other pre-60S particles
143445231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
LTN1_E3_ligase_6th
Sialidase
Longin
Motif
Other DBs
NCBI-GeneID:
143445231
NCBI-ProteinID:
XP_076800293
LinkDB
All DBs
Position
2:16634738..16639783
Genome browser
AA seq
1330 aa
AA seq
DB search
MGKPGKLRSGLHTKTKKWAKGGSSASNPELHTHRDKAQTRFFHMQPTLKSNKGLTTEALK
IHNEMANDKTVSTIMDGTDNESVGTFGTFLSGLSDCTNATFGKIQRYWLNNSAKHKEVCA
VLAAITEVIRGEGGTESDTAYFAALVTALSSVEQVESAAAVAYLLSMTCKNVPVPVLRAK
FSEVSKLLCDILKENSGSAASVPTALVRSVMSCLGTILRQQNISIWQDSSATNIFHTMLS
FVIHSKPKIRKAAQNAVCSVICASGFVINSEDNLVVHPASATTAKFCIAQLEKFGGISAD
AAVCHILSLLGRILHCFPQVALKRSCETVLRLMTLSDPVVKSVCLQTLYSMFVSKPDLTV
LPPGLNAQIIGALYDYHPSSSDAQACSAWLSVMEKALQNLSVSYLGSAGEKEAKTLAVAH
IPKLMNTCFKLMLSQSMKVANVASNTVKVLLRDCASTFWAVDQESCTEEKKFVSIIFQIF
DDGLKYKFHSIWNLVFEIVEIAFKCIVKPAHANIVKPILINIVDLRNAPQFQYKTELDNA
VGAAIGKLGPKSVLEAAPLQIDGTENDYSFCRSWLLPVMKNSISHANLSFFSEYFLPLAV
KLRLKAQELKASGHQVETKTYETLQFQCWDLCPVFCKDARDISVAFPAVARILGRALNEH
MDLRLIVMQALRNIVISCRESEKDCQVVARFAKNYIPILFNLYANVELSNNADDVKQTIV
DANKNKSLERLAALETIKIYLRVTDCELISTYFLKAKQRVFEGDNENDATRLALLDLMIS
MVTYVKKDQINDLYKAMIPMLNSPNHSMQKKAYRLLEEICGFQEGACKEFVASHLSELKL
LLLSGLTSASASSKGPRIKCILQVFKQLHSNPDTVQESLEFLTVSVPEVILCTKSSKKSR
LAAFGFLVDVGQEFINAFNEQNPNESMQAVLKDYFEIVSTGLAGFPMMIQATIVALSRLI
YEFKDQLSSDLMDSTISNICLLLGCNTREVCKAALGFVMVLFTILPRATLAQYTKQILDA
LLNWKPETRRHFRFRVKKILQRLVRKFGFDTIYSMTPEEHRKQLQNIRKVDERKKRASEK
QKELPNDVYDDDDTFSKKKKKESIEEILADSSDSDEDADKHIAKTNKKPKVKSAWLQDEQ
EEPMNLLDPSVSQKVMSTNPKCLTEKKDAPFKTAPDGRFIIGGDESDIEDDDDDAETKKI
LIELGVGKQKSFGQKVVSVKGKKRRNSASEEDKDEELGGKRPSYQPGGKGIHRNLNSEEA
GEKFKSKAGGDAKRKGTHEPYAFLPFNTGVLNKRKRKKLSGQFDGLIKAARKGAAAGKKK
KFINDRQRRK
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaccaggaaaattaagaagtggtctgcacactaaaacaaaaaagtgggccaaa
ggcgggtcaagtgcctccaatcctgagctacatactcatcgtgataaagcacaaacgagg
tttttccacatgcaacccacattgaaatccaacaaaggtttaacaaccgaagctttgaaa
attcacaatgaaatggcaaatgataaaactgtatccacaataatggatggtacagataat
gaaagtgttggaacatttggcacctttttaagtgggttatcagactgtacgaatgccaca
tttggcaaaatacagcggtactggctgaataactctgcaaagcacaaagaagtttgtgct
gtgttagcggcaatcacagaggtaatcagaggagaaggtgggacagaatctgatactgca
tattttgctgctttagtgactgctctctcatcagttgagcaagttgaatctgctgcggct
gttgcatatttgttatccatgacctgcaaaaatgtccctgtgcctgtattgcgtgccaaa
ttttctgaagtttcaaagttgttatgtgatattctgaaagaaaattctggaagtgctgca
tctgttccaactgccttggtacggtcagtaatgtcatgtcttggcacaatactacgccag
caaaatatttccatttggcaagattcatctgcaactaacatatttcacacaatgctttca
tttgtcattcattctaaacccaaaattcggaaggcagcacaaaatgctgtttgtagtgta
atatgtgcaagtggatttgtgataaattcagaggacaatttggtcgtgcaccctgcttca
gcaacaacagcaaaattttgtattgcccagttagaaaagtttggtggaatatctgctgat
gctgcagtttgtcatatattatcacttttggggcgaattcttcattgttttccacaagtg
gctttaaaacgatcatgtgaaactgttttacgtttaatgactctgagtgacccagttgta
aaatcagtttgtttgcaaacgttgtacagtatgtttgtcagcaaacctgatcttactgtc
ttgccaccaggactaaatgcacaaattattggcgcattgtatgattatcacccaagttct
tctgatgcgcaagcatgttcagcgtggctttctgtcatggaaaaagcactgcagaatctt
tcggttagttatttgggttcagctggtgaaaaagaagcaaagaccttggcagtagctcat
ataccaaagctaatgaacacctgtttcaaactcatgctttcacaaagcatgaaagttgca
aatgtagcatcaaatacagtcaaagttttgttgagagattgtgcatcaacgttttgggct
gttgatcaagaaagctgcacggaagaaaagaagtttgtttctattatttttcagatattc
gatgatggtttaaagtataaatttcattcaatttggaacttggtatttgagattgtggaa
attgcttttaagtgtattgtaaaaccagctcacgcaaacattgtaaaaccaatattgatt
aacatagtggatctaagaaatgctccacaatttcagtacaaaactgaattggacaatgct
gttggtgctgctattggaaaattgggtcctaaatcagttttagaagcagctcctctgcag
atagatggaaccgaaaatgattacagtttctgtcgtagctggttgttgccagttatgaag
aattctatatctcacgctaatctcagctttttctcagaatattttcttccattggctgtt
aaattgcgtcttaaagcacaagaactgaaagcaagtggacaccaagttgaaacaaaaact
tacgagactttacagtttcagtgttgggatctatgtccagttttctgcaaagatgcaaga
gatatttctgttgcatttccagctgttgctcgaattcttggtcgcgccttaaatgagcac
atggatttgcgccttatagtcatgcaagctttacgaaatattgttatttcatgcagggaa
tctgagaaggattgtcaagtggtggcccgatttgccaaaaattatatccccatcctattt
aatttgtacgcaaacgttgaattgagtaacaatgcagatgatgtaaaacaaacgattgtt
gatgccaacaagaacaagtcccttgaaaggctagcagcccttgaaactataaaaatttat
ttaagggttacagattgtgagctaataagcacgtactttctgaaagccaagcagagagtt
tttgaaggagacaatgaaaatgatgcaactcgcctagcattacttgatttgatgatttcg
atggtgacatatgttaaaaaagatcaaatcaatgacttgtacaaagcaatgattcctatg
ctcaatagtcctaaccacagcatgcagaagaaagcttacagacttctcgaagagatctgt
ggatttcaagagggtgcttgcaaagagtttgtagcgtcacatctatctgaactaaaactg
ctgcttctaagtggtctcacatcagcttcagcatccagcaaaggcccaagaatcaaatgt
atattacaggtgttcaaacaacttcactctaatcctgacactgttcaagaaagtttggag
tttttaacggtttctgtgcccgaggtgattctgtgcaccaagagttcaaaaaagagtcgg
ctggctgcttttgggtttttggtagatgttggccaggaattcataaatgctttcaacgaa
caaaatccgaatgaatcaatgcaagcagttctaaaggattattttgaaatagtttccaca
ggacttgctggattccctatgatgattcaggcaactatagtggcattgtcaaggctaatt
tatgaatttaaagatcagctttcttcggatttaatggattcaaccatttctaatatctgt
ttattacttggttgcaacacgcgtgaagtgtgcaaagctgctttaggatttgttatggtt
ttatttactatactgccacgagctaccttagcacagtatacaaaacagatactggatgcc
ttgcttaattggaaaccagaaactcgccgacattttcgtttccgggtgaagaaaatcttg
caaagattagttcgtaagtttggatttgacactatttattccatgactccagaagaacat
agaaaacagcttcaaaatatccgtaaggttgatgaaagaaagaaacgtgcttctgagaaa
caaaaagaactgcccaatgatgtttatgatgatgatgatacctttagcaaaaagaagaag
aaagagtccattgaagaaattttagctgattcatcagatagtgacgaagacgctgataaa
cacattgccaaaacaaacaagaaacctaaagttaagagtgcttggctgcaggatgaacaa
gaagagccgatgaatcttttggacccttctgtgtcgcaaaaagttatgagcacaaatcca
aaatgtttaacagagaaaaaggatgccccatttaaaactgccccagatggtcgatttata
attggaggtgatgaatctgacatcgaagatgatgatgatgatgcagaaactaagaagatt
ttaattgaacttggtgttggaaagcaaaagtccttcggtcagaaggttgtgagtgttaaa
ggtaaaaaacgaagaaactcagccagcgaagaagataaagatgaagaacttggaggtaaa
cggccatcctatcaacctggaggcaaaggtatccatagaaaccttaacagtgaagaagca
ggagaaaaatttaaatcgaaagctggtggtgatgctaaaagaaagggaactcatgaacca
tatgcgtttttaccttttaatactggagtcctgaataaaagaaagagaaaaaaattgtct
ggacagtttgatggacttattaaagctgctaggaaaggggcagcagcaggtaaaaagaaa
aagtttattaatgatcgccagaggcgaaagtaa
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