Clavelina lepadiformis (light-bulb sea squirt): 143445234
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Entry
143445234 CDS
T11416
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03022
Basal transcription factors
clep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
143445234
09124 Replication and repair
03420 Nucleotide excision repair
143445234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clep03021
]
143445234
03400 DNA repair and recombination proteins [BR:
clep03400
]
143445234
Transcription machinery [BR:
clep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
143445234
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
143445234
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
VWA
Motif
Other DBs
NCBI-GeneID:
143445234
NCBI-ProteinID:
XP_076800296
LinkDB
All DBs
Position
2
Genome browser
AA seq
396 aa
AA seq
DB search
MDEDNEKAYRWEGDYEKTWEALREDDSGSLQASIDAEINKAKKRRLLKKQRKVRLGMMRH
IFIVLDMSQAMTDQDLKPNRALVVLKVLQKFVENFFDQNPIGQLGFIITRAKRAESLSEM
SGTSQSHIKSLMKLSSEITATNAKSCTGEPSLQNSLELAEKTLKNMPSHTSREVVVIMGS
LTSCDPSPIYDTIEHIKMQKIRCSVIGLSAEVHICRHLANETGGTFGVILDQTHFVDLLN
DHIDPPSGMATESSLIKMGFPQHIPPHENGKVSMCMSTKQFSVGGYYCPQCQSKYSELPV
QCEVCSLTLVSAPHLARSYHHLFPLPQFSEIQYARYVHQGGREQNCFSCLKNLQKGSESS
VHQCNKCKTIFCLDCNVFMHVTLHCCPGCINSRCEI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggataatgaaaaggcatatcgatgggaaggagactacgaaaaaacatgggaa
gcactgagagaggatgacagcggatcccttcaagcaagtatcgatgcagaaatcaataag
gcaaaaaagcgtcgccttttgaaaaagcaacgtaaagttcgtttaggaatgatgcgtcat
attttcatagtacttgatatgtcacaggccatgactgatcaagatttgaaacctaatcga
gcactggttgttttaaaagtgttacaaaagtttgtggagaacttttttgatcaaaaccca
attggacagttgggttttataattactagagctaagcgagcagaaagtctaagcgagatg
tctggaacatctcaaagtcacattaaatcgttgatgaagctttcttctgaaattactgca
acaaacgcaaagagctgtaccggtgagccttcccttcaaaattcacttgagttggctgaa
aaaacactgaaaaatatgccaagccatacaagccgtgaagtagtagttatcatgggaagt
cttacatcttgcgacccaagtccaatatatgacacaatagagcacataaaaatgcagaaa
attcgctgcagtgttattggattgtcagcagaggtgcacatatgcagacatctggccaat
gaaactggtggaacttttggtgtgattctagatcaaactcattttgttgatttgcttaat
gatcatattgatccaccttctggcatggcaacagagtcatcactaattaaaatgggattc
cctcaacatataccacctcatgaaaatggaaaagtatccatgtgcatgtcaacaaaacaa
ttcagtgttggtggttactactgcccccagtgtcagtcaaaatattcagagcttccagtg
caatgtgaagtatgttctcttacacttgtttctgccccacatttagctcgttcttatcat
catttatttcccttgccacagttttcagaaatacaatatgctcgttatgtgcatcaaggt
ggtcgggaacaaaattgcttttcatgtcttaaaaatttgcaaaaaggctctgaatcatct
gtacaccaatgtaataagtgtaaaaccatattttgccttgactgtaatgtgtttatgcat
gtaactctgcactgctgtcctgggtgcatcaattctaggtgtgaaatatga
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