Clavelina lepadiformis (light-bulb sea squirt): 143445463
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Entry
143445463 CDS
T11416
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04140
Autophagy - animal
clep04142
Lysosome biogenesis
clep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
143445463
04140 Autophagy - animal
143445463
04148 Efferocytosis
143445463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clep04131
]
143445463
Membrane trafficking [BR:
clep04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
143445463
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
VPS18_solenoid_2nd
DUF928
Lgl_C
TPR_12
TPR_WDR35
Motif
Other DBs
NCBI-GeneID:
143445463
NCBI-ProteinID:
XP_076800694
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Position
2:8266372..8284179
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AA seq
900 aa
AA seq
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MHDAYEAVPILERLPLVIECIACWGENPKVIISNTNSVVHKNNKNSTINLLVGTKQGHLL
VYKLEGGSGHAEVTLEKSNKSFSKKPLQQLYVSPEYKIVISLSDGIVSVHDLTTYQLITC
VQKSKGASFFSADLEEQISSMGDVAHALKLCVSVKRKLQFYFWKKRDFVELHNDICLAEL
PRTIAWCKDSLCIGFKREYYLVKLDGDEDLKELYPTGKLLEPVIGNLGNDQVILMIDDRS
VFVDSNGEPTYKHPFAWSDIPVIVESQPPYLIAVLPKYVEVRTMEPKLLIQSIDINKPKM
LCSWGDCIFVASNTHVWAIQQLPVSSQIDKLIKDREFELALKLAKMSDTEDEQEKNKSIQ
HINTLLAFELFCQKRFDESLHNFTNLKTDPSQVIGLYPDLLPGDYRQNLKYPSAIPAMAG
PELEKAMLSLIEYLTQKRNETMAISGSIVDLYPIVEGNVTVRSKRQLLQIIDTTLLKCYI
KTNDALIAPLLRLPDNNCHVEEAERILKKAHKQRELIELYRKKGLHRKALNLLLHQSQTQ
QNKEEVREDMIEYLQHIGQTNIDLIFDFAPGLLKIDPMQAMKIFTEDTAEVESLSKNQVL
DFLDSISINLAVAYLEHVIHTWNDETPEFHNRLLLAYKDRVLALTKEHHDSLAEEDQTTL
QRGPVELTETRNKLLFFLETSQQYQAERILPEFPPDRLLEERAVLLGRMGNYEQALALYA
HSLKDPIRAENFCQLVYNQNPSKNSDVFLCLLRMYLQPESLHRDTDAPFLPEDQPRSINL
HAALRVMHQHANKLNPEKALMLLPTSVSIRNIEVFLHNVLEAQAEKKHQLQVYESLLLSE
SRQTHIQRIHHENTKCVVTEERICRVCKKKIGISAFARYPSDVVVHYYCCRDRKGLPTGQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcttatgaagctgtacccattctggaacgcttgccccttgttatagaatgc
attgcttgttggggtgagaatccaaaagttattatttctaacaccaactctgtggtacac
aagaataataagaactcaactataaacttgctggttgggacaaagcaaggccatctgctt
gtctacaagctagagggtggaagtggacatgcagaagtcactcttgaaaaatctaacaag
tccttttcgaaaaaacctctgcaacagctctatgtgtcacccgaatataaaatcgtcatt
agtttatcagatgggattgtttctgtacatgacttgactacatatcagctaatcacatgc
gttcagaaaagcaaaggagccagttttttctcagctgacttggaggaacagatttcatcg
atgggcgatgttgcacatgccttgaagttgtgtgttagtgtgaagagaaagcttcagttt
tatttctggaagaagcgtgattttgtggagttgcataatgatatctgtctggctgaacta
cccagaaccattgcatggtgcaaagattccttgtgcattggcttcaaaagagaatattat
ctggtgaaacttgatggcgatgaagacctcaaagaactctatccaactggcaagctattg
gaaccagtaattggaaacctgggtaatgatcaagtgattctcatgatagatgataggagt
gtctttgtagatagcaatggagaaccaacctataagcacccttttgcttggtcagatatt
cctgttattgtagaatcacagcctccatacctcattgctgttcttccaaagtatgtggaa
gtacgaaccatggaaccaaaactgcttattcagagcattgatataaataaaccaaagatg
ctgtgtagctggggagattgcatttttgttgcatcaaatacccatgtgtgggctattcag
caactaccagtctcatctcagatcgataaactcataaaggatagagagtttgaacttgca
ctgaaattggctaaaatgtctgacactgaagatgaacaagaaaaaaataaaagcatccag
catatcaacactttacttgcgtttgaactattttgtcaaaaacgtttcgatgaatcatta
cacaacttcactaatttaaagactgatccttctcaagtgattggtctctatcccgatctg
ctccctggtgattatcgacaaaatcttaaatatccttccgccattccagctatggctggt
cccgagcttgaaaaggctatgctttccctcattgaatatcttactcagaaaagaaatgaa
acaatggcaatttctgggtccatcgttgatttgtatcctattgttgagggcaatgttact
gttcgttctaaacgccagctactacagattattgatactactcttttaaagtgttacatt
aagactaatgatgctttgattgcgccactgcttcgtcttcctgataacaactgtcatgtt
gaagaagcagaacgcattttgaaaaaagctcacaaacagagagaattgattgaattgtac
cggaaaaaaggtttgcatagaaaagcattaaacctactgctgcatcagtctcaaacgcag
caaaataaagaagaagttcgtgaagatatgatagagtatttgcagcacattggccagaca
aacattgatttaatctttgattttgctcctgggctattaaagattgaccctatgcaggca
atgaagatctttactgaagatactgctgaagtagaaagtttgtcaaagaaccaagtgttg
gattttttggattcaatttcaatcaatttagcagttgcctatttggagcatgttattcat
acctggaatgacgaaaccccagaattccataatcgtttattgctggcttacaaagataga
gttttagctttaacgaaagaacatcatgattctctggctgaagaggaccaaacaacgtta
caaagggggccagtggaacttacggaaactagaaataagttactattttttctggaaact
tcacaacagtatcaagccgaaagaattttgccagagtttcctcctgatagattacttgaa
gaaagagcagttttgctcggccgcatgggcaattatgagcaagctttagcgttgtatgct
cattccttaaaagatcctatacgggctgaaaatttctgccaactagtttacaatcaaaat
ccttccaagaatagtgatgtttttttgtgcttgttgcgaatgtatcttcaaccagagtca
cttcacagagacactgatgcgccatttcttcctgaagatcagccgagaagtattaatctt
cacgccgccttgcgagtaatgcatcaacatgctaataagttaaatccggagaaggcgctt
atgctccttccgacgagcgtcagcatacgcaacattgaagtttttttacataatgtgctg
gaagctcaggcagagaagaagcatcagctacaagtgtatgaaagtcttctgctttctgag
agccggcagacacatatccaaagaattcatcatgaaaacacgaaatgcgtagtcaccgaa
gagcgaatatgtcgcgtttgtaaaaaaaagattggaatcagtgctttcgctcgttatcca
agcgatgttgtggtgcactactactgttgccgagaccgaaaaggccttcccactggacaa
taa
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