Clavelina lepadiformis (light-bulb sea squirt): 143445792
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Entry
143445792 CDS
T11416
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
143445792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clep03021
]
143445792
03036 Chromosome and associated proteins [BR:
clep03036
]
143445792
Transcription machinery [BR:
clep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
143445792
Coactivators
SAGA/TFTC/STAGA complex
143445792
Chromosome and associated proteins [BR:
clep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
143445792
STAGA complex
143445792
TFTC complex
143445792
SAGA complex
143445792
SLIK complex
143445792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
CFAP251_N
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
NBCH_WD40
DSE1_N
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_EIPR1
PAC11
Beta-prop_WDR75_1st
Beta-prop_Vps41
WD40_RFWD3
PROPPIN
Beta-prop_IP5PC_F
Cytochrom_D1
Beta-prop_WDR35_TULP_N
TRM82_WD
Beta-prop_HPS5
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
143445792
NCBI-ProteinID:
XP_076801230
LinkDB
All DBs
Position
2
Genome browser
AA seq
659 aa
AA seq
DB search
MKRARTEQLQATLLSYLKKRNFTDSEAGFRNNVKFEETLVDVASRTLLENKISLLDSVAM
STHDLKDYFLAFKGLQEFVCKAIADDKYHGFKNLLFPVFVHCYLDLIMAGRLKEAEEFYV
CFSDSKHFKVYNEVLTKLYDIRESNDLQKYFLMPQIRNQFCEMSLSQAEKQLLMRFLQGQ
PYLLLLKLMNERIRISSCSHKARDIGVSTQPHDASPDNVSFACNSNPDSKLQEHDSKANV
PDEPLVSPMIISPPSLVPVGTSSTTQGQAVDAAGISLDLATLRRRVQEVRDSAPRLDNFC
LYRLKENNNAIIHATSSNNRTLLCTGHEESTVNLWNICNQNFSKSLKYSQDFQRCSESSE
IFDTEPSSSNVDISSVSFGCEFLNDVLLKNEMRSVNRKKQLFDKPGVTTLYGHSGPVYDS
CFTHDDKFLLTCSEDTTVRLWDMTTLANRVIYQGHTFPIWCIDISAMSMYFATGSYDKTA
KLWSVDRTYPLRMYAGHQHSVESVCFHGNASYLATADHTVRLWDINSGKTVRLLMGHWAP
VTCLAFSPDGKSLVSSGEDCRIRVWDISSGMLVKEIRAHTDTVRSLHFSLDGSLLTSCGA
DGSVFVWDVNCRASVNAAEASAKSSSNPNIVAHIKLNKKAKRLLSSSFFKDFLNVFSVH
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcgcaagaacagagcaacttcaagcaactcttctctcatatttaaagaaacgt
aatttcactgactctgaagcaggatttcggaataacgtgaagtttgaagaaacgctcgtt
gatgttgcatcccgcactctgttggagaataaaatttctttattggattcggtcgccatg
agcactcacgatttgaaagattattttctggccttcaaaggcctccaggaatttgtttgt
aaggcaatcgctgatgataaatatcatggatttaaaaatctcttgtttcctgtgttcgtc
cattgctatcttgacctaattatggcaggtcgtttaaaagaagctgaagagttttatgtt
tgtttctccgacagcaaacattttaaggtttataatgaagttctgacgaagttatatgat
attcgtgaatcaaatgatttgcagaaatattttctcatgccacaaatccgcaatcagttc
tgtgaaatgtctttatcccaagcagaaaaacagcttttaatgcgttttttacaaggacaa
ccatatttgcttctactcaagcttatgaatgaaaggatacgtataagcagttgttctcac
aaagcgagagacattggtgtttccacccaacctcacgatgcttctccagacaatgtttca
tttgcttgtaatagcaatcctgattccaaactacaggagcacgatagcaaggcaaatgtg
ccagatgaacctttagtatcaccaatgataattagtccgccatccctagtccctgtcggc
acctcaagcacaacacaaggacaagcagttgatgccgctggtatttcacttgacttagcg
actcttcggagaagagttcaagaagtcagagattctgcgccacgtttagacaatttctgt
ctctacagactgaaggaaaataacaatgcgataatacacgccacttcctccaataatcga
acacttttatgtactggacatgaagagtcaactgtcaacctttggaatatttgtaaccag
aactttagcaagagtttgaagtatagtcaggattttcaacgttgttcagaaagcagtgag
atctttgatacagaacctagtagctcaaatgttgacatttcaagtgtttcatttggctgt
gagtttttgaatgatgtattgctaaaaaacgaaatgcgttctgtaaatcgaaagaaacaa
ttgtttgacaaaccaggagtgactacgttatatggacatagtggtccagtttacgattcc
tgtttcacccacgatgataaatttttgttgacttgttctgaggacaccactgtgcgtttg
tgggacatgaccaccttggctaacagggtaatttatcaaggacacactttccccatatgg
tgtattgatataagtgcaatgagcatgtattttgccacaggttcgtacgacaaaacagct
aagttatggtctgttgatcgaacatatccattacgaatgtatgctggccatcaacacagc
gtagaaagtgtgtgttttcatggtaatgcaagctaccttgctaccgcagatcatacggtt
cgcttatgggacatcaacagtggtaaaactgttcgtcttttgatgggacactgggcacca
gttacttgcttagcattttcacccgatggaaaatcacttgtaagttctggcgaggactgt
cgcataagggtatgggatatttcatctggaatgttagtaaaagaaatcagagcgcacact
gatactgtgcgctctttgcacttcagcttagatggctccttgctgacatcgtgtggcgcc
gatggctctgtatttgtctgggatgttaattgcagagcttctgtaaatgcagcagaggct
tcagcaaagtcttcttcgaatcctaatatagtagctcatataaagctaaataaaaaagca
aagcgtttgttatcttcatctttttttaaagactttttaaatgtgttttcggtgcattag
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