Clavelina lepadiformis (light-bulb sea squirt): 143445944
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Entry
143445944 CDS
T11416
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
clep03015
mRNA surveillance pathway
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143445944
09122 Translation
03013 Nucleocytoplasmic transport
143445944
03015 mRNA surveillance pathway
143445944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143445944
03041 Spliceosome [BR:
clep03041
]
143445944
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143445944
TREX complex
143445944
Spliceosome [BR:
clep03041
]
Complex C
Other components
EJC/TREX
143445944
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143445944
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
F07F6_N
Motif
Other DBs
NCBI-GeneID:
143445944
NCBI-ProteinID:
XP_076801474
LinkDB
All DBs
Position
2
Genome browser
AA seq
246 aa
AA seq
DB search
MADKMDLSLDDIIKISKKSKSGRGRGRGGRKGGNRGAGGGVAQARNKRGGGRGGRGRGGR
QGSFNRSTNVPTDKWDHDMYNPGKQGQKRGGGVSDGVGRGSGKLLVNNLDFGVSDSDINE
LFSEFGALRRAAVHYDRSGRSLGSADVHFERRTDAARALQQYNGVPLDGRVMHIRFVDGQ
TATSNSDMNGRLGQPNSRGSYGGRGGRGKGSRGRGRGRGGRQGRKEEVSAEELDKQLDDY
ISKMEE
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaaatggatctttcccttgatgatatcattaaaattagcaaaaaatctaaa
agtggtcgtggtagaggtcgcggaggtcgtaaaggtggaaaccgtggcgctggtggtggg
gttgctcaagcacgtaacaagcgaggtggaggtcgcggtggacgtggacgtggtggtcga
cagggttcctttaacagatcaacaaatgttccaactgataagtgggatcatgacatgtac
aatcctggtaaacaaggtcaaaaaaggggtggtggagtatctgatggtgttggaagggga
agtggaaaactgttggtaaataatctcgacttcggagtgtctgatagtgacatcaatgaa
cttttttctgagtttggcgcattaagaagagctgctgttcattatgacagatctggcaga
tctttgggctctgctgatgttcactttgaaagacgaactgatgctgccagggcacttcag
cagtacaatggtgttcctcttgatggtagagtaatgcatattcgctttgttgatggccag
acagcaacttccaatagcgatatgaatggaagactcggacagcccaattcacgtggttca
tatggcggccggggtggaagaggtaaaggaagccgcggcaggggccgtggtcgtggaggg
agacaaggccgaaaggaggaagtttctgcagaagagttagacaagcaattggatgactac
atttccaaaatggaggaataa
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