Clavelina lepadiformis (light-bulb sea squirt): 143446624
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Entry
143446624 CDS
T11416
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04140
Autophagy - animal
clep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
143446624
04148 Efferocytosis
143446624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clep04131
]
143446624
Membrane trafficking [BR:
clep04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
143446624
Hops complex
143446624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
VKOR
zf-RING_Vps41
zf-RING_11
Tal-1A_2A
zf_RING_Vps8_fungal
zf-C3HC4_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
143446624
NCBI-ProteinID:
XP_076802463
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Position
2:21408629..21417478
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AA seq
1003 aa
AA seq
DB search
MASILDQYEATISRTTTSSRTMRSSSNMNNNEPVSSGYINTRVEDEIPIFSKSKINFKPQ
EPITHLCICNNMLCMVMSRRLLLRINLLDPDNVDEVDLFRGDDEVYKIYLDPTGQYLLVS
LKSEETLFLSANSRRPKALNKFKGHKVESVGWCRTASENTTGPVLVGTSRGLIMECSIEA
GEETKFFGGSVDQYFKQVFNFGKSDNQSSAVMGLEYFSTATRSNGKSDYCIFAITPSRLF
QFNGSIYNNSGDVPVFQTIFAPYENIPPRYIDLPGFIDNSQLIFLYSSKGNTMQVPTQFA
WLAAPGIYVGDVKSSQAMDESALQQRSLVANPKLISYPAAENNNPFAEENTNVLNIVLTE
FHILLLYSDRLKAVCSLNEQVICEDVYTSRYGQLVGLIRDPILNTIWAYTERAIFKYKVV
KESRDVWQMYLDMGKFDLAREYCRDNPANLDQVCTKQAEHAFEKGQYQESALYYAITQNS
FEDVALKFIRADKENALRAFLQKKLSGLKENETVQMTMLSTWLVELYLNHLGRLRENEER
DPESLQKCQENLRKLLAQGRLKDCFQQNCATIYDLLISHGDIEDYVFFAVLMQDYERVVN
HHVQNEAYTAALEALRKQNDISLYYKFSPVLMQHIPTATVDSWIDLKDRIDPKHLIPSLI
NCTQSGHREQWMEAVRYLEYCTTDLHCTDPAIHNYLLSLYVKYQPESVTNYLKDQGEDQA
EIHYDVKYALRLCLGDGDEKAKPLLRRACVTIYTVMCLYEEAVSMALQVDVELAKSIADR
RELEEEDEELRKKLWLQIAKHVVQEDKDISRAMKFLQESGDLLKIEDILPFFPDFVTIDH
FKDALCESLAEYNKHIDELKEEMDDATTSAHSIRGNIQDTRNRHLVVGETDRCWSCGRQL
LTRGFYLFPCQHAFHSDCLWIEAKPLLIDTKREIAEQLHRELAALNQSQSGQSDDAMKER
RLRRQKLVLQLDETIANECILCGEIAVRAIDKPFFIDETDDWS
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaatattagaccaatatgaggcgactatatcacgaaccacaaccagcagccga
actatgcgttcatcgagcaatatgaataacaacgaacctgtatcgagtggttatataaac
acaagagttgaagacgaaattccaatctttagtaagagtaagatcaatttcaaaccccaa
gaaccaatcactcatctatgtatatgcaacaacatgttatgtatggtgatgtcaagaagg
ctgcttcttcggattaacctccttgatcctgataatgttgatgaggttgatttgtttcgt
ggcgatgatgaagtttacaaaatctatctggatccaactgggcaatatctcttggtttct
cttaaatctgaggagacactttttctgtctgcaaattcaagaagaccgaaagctcttaat
aaatttaaaggccataaagttgaaagcgtgggttggtgtcgaacagcaagcgaaaacacc
actggcccagtcctggttggaaccagtcgtggtctcattatggaatgttccatcgaggcc
ggtgaagagacaaagttctttggcgggagcgttgaccaatactttaagcaagttttcaac
tttggcaaaagtgacaaccaaagctcagcagtgatgggattggagtatttttccaccgct
acaaggagcaatggcaaaagtgattattgcatatttgcgatcacaccaagccgcttgttt
caattcaatggctcaatttataacaatagtggagatgttcctgtattccagaccattttt
gctccatatgaaaatatcccaccaagatatattgacttgccgggctttattgataatagc
cagttaatctttttgtacagttcaaagggaaacactatgcaagttcccacacaatttgca
tggttggctgcaccgggcatctacgttggagatgtaaagtcgtcacaagcgatggatgaa
tctgctctgcaacagcgatctcttgtggcaaatccaaagcttatttcttatccagctgcg
gaaaacaacaatccattcgcggaagaaaacacaaacgtcctcaacatagttctcaccgaa
ttccatattcttctcctttactccgacagattgaaagcagtttgttcactgaatgaacaa
gttatctgtgaagatgtctacacttcaagatatggacaacttgtgggcttaattagagat
cccattctaaacacaatctgggcctatacagagcgtgccattttcaaatataaggttgta
aaagagtcacgggacgtttggcagatgtatcttgatatgggaaaatttgatttagctcga
gagtattgtagggataaccctgccaatctagatcaggtttgtacaaaacaagctgaacat
gcatttgagaagggccagtatcaggagagtgcactttattacgcgattacacagaactca
tttgaagatgttgcattaaagtttattcgtgccgataaagaaaatgctctgagagcattt
ttacaaaagaaactcagtggtttaaaggaaaatgaaacagtccagatgacaatgctgtca
acttggcttgttgaactttacctcaaccaccttggaagattgagggagaatgaggaaagg
gatccggaatctctgcagaaatgccaggagaatctgcgcaaactgctagcccagggccga
ctgaaagactgtttccagcaaaattgcgcaacaatctatgaccttcttattagtcatggg
gatattgaggattacgtcttctttgcagttctaatgcaggattacgaacgagttgtgaat
catcatgtccaaaatgaagcgtatactgcagcccttgaagcgctcaggaaacaaaatgac
ataagtttgtattataaattctctccagtgctaatgcagcacataccaacagcaactgtg
gattcgtggattgatttgaaagacagaattgatccgaaacatttaatcccatctctcatc
aattgcactcagagcggtcatcgagaacagtggatggaagcagtgcgttacctcgaatat
tgcacgacagacttacattgcacagacccagcaatacataactacctactatccctctat
gtcaaatatcaaccagaatcagtgactaattatcttaaagatcagggggaggaccaagct
gaaattcattacgatgtcaaatacgccttgagactttgtctgggtgacggtgacgaaaaa
gctaaaccattgttacgtagagcgtgtgtcacaatctacactgtcatgtgtttgtatgaa
gaagctgtgtccatggcgctacaggtggatgtcgaacttgcaaaatcgattgcagatcgg
cgagagctggaggaagaagatgaggaattaagaaagaaattgtggttgcaaatcgccaag
cacgttgtccaggaggacaaggacatttcgagagcaatgaagtttctccaggaatctgga
gatctcttgaaaatagaagacattcttccattttttccggactttgtcacaattgatcac
tttaaagatgccctttgtgaatcgcttgctgaatataacaagcacatcgatgaactgaaa
gaagagatggatgatgcaacaacaagtgctcattccatccgtggcaacatccaggataca
agaaatcgccatctagttgtgggtgaaacagacaggtgctggtcatgtggtaggcagctc
ctcacgaggggattttacctgtttccatgccaacacgcttttcacagtgattgtttgtgg
atagaggcaaagcccttgctaattgatacaaagcgcgaaatcgcagaacaactgcataga
gagttggctgcattgaaccaatcacagtcgggccagtctgatgatgcgatgaaagaaagg
cgtttgcgtcgtcaaaagttggttttgcaacttgatgagacgatagcgaatgaatgcatt
ttatgtggcgaaattgctgtccgtgctatcgacaagccgttctttattgacgaaactgat
gattggtcatga
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integrated database retrieval system
