Clavelina lepadiformis (light-bulb sea squirt): 143447049
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Entry
143447049 CDS
T11416
Name
(RefSeq) nuclear pore complex protein Nup153-like
KO
K14296
nuclear pore complex protein Nup153
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
clep03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143447049
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
143447049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143447049
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
143447049
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
Nup153
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
143447049
NCBI-ProteinID:
XP_076803087
LinkDB
All DBs
Position
2
Genome browser
AA seq
1226 aa
AA seq
DB search
MEQNNFLRKIWSSKSNSRQQPTAFSDKQPAFNLSSFSSPAPSISKSPTVGTSPSSFYSGR
VQYGGAMSTSSPYRIPKITKVQGSSSNKTKTSGQKSSSQFTGALSSTARKIMQTLEKMST
PLRDLKKIPPPDTRTPTSFMARAHRKRTMDHSINSPQKKRVPPTKGLTSVSSAIVTTSAK
MPLDNSLVTKSIVKNFVSESRQTARNLASSTKDHVIHRGQPAVVATYSSSEGLKHNYEAS
SGGGGGKMKHQRRAVGHYSAISQTPEKNVLPPVPNITMNIPTLPSFDFNGPGNTSTPAPP
KLSKINLVKGKEGVEQKDHFDLEFVFSPPAPRPSPVKKSQPTPQKSSVTFPFKSPPDASS
KAASLSRTTQKSMDQSSSAHTTKSIQTKTQDFTPVKAGSVMDILGKGDKISKTPLARATA
VSTTSSAISKPPLSEVFGKSKDKWECGTCMIMNSNDRDKCEACQTPKPEAKSSKADSKPL
SELFKKPAGKWECGTCMIMNDNSQTKCEACQTPKPGSQSSQPPLSSIFQKQKDRWECGTC
MIMNDNSRSKCEACETPKPGASLASGSDSKPFTFGAPASQTKSSTTFTSNLANFKPSAKS
SFSFGAPTSSPIVKSLVNFSDKNKWECPTCLITNDQSRMNCEACTTPKPGSESKSDKKGP
ASGIVFGINQSKSSKWDCKVCLVPNDAERTKCVACESPRTDLKNDSSANFQKSTFKFGST
SSNVVKFGIPTKPETKPTTTSSEESVTAATSENKIVTSIAPSFPAGIKFGVQQPSVSKEE
PKPVASFVTTAVSSSPGAISQLLFGAPKTSTKPASTTPSFGTPTSVSSQPTAYSVTKKRN
LDETDSTVISAKLPTFGVGGNLNTQTGSTASLVTGFTLTAPKTTQAVQQKPAFAGFNVGA
KQTSEGFGATLNAQKPATSTTQTPSTAPPFLFGSVTKPASSVVTTTTTAAKPALFSGFSS
TQSSFGAPPQSSATPPSFSFGKTPTSNASGSTVNDSSQPTKLGFSFGSTPASTAPSNGMF
GKAAAPASNPTIDKPPVFGSTTAPATGFSFGSNASSSTTTQKGSGMFSTSQSVPKPTFNF
GASAEPAQTGFQFASNPAQTATPAKAFSFGNSGQNQSVFSNPSASTSGFNFSGAQNKPAF
SSTPGTFQFGAGSSNPPKPDSTSTGFQFNANPSLPTPAFGSTLGASPAPNAGGMFSIGQS
DPNKQNRATTPVQNRPMRRATRRLRK
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacaactttttacgaaaaatatggagctcaaaaagcaatagccgtcagcaa
ccaacagcatttagtgataagcaacccgcatttaatctctcatcattttcaagtcctgcc
ccttccatttcaaagtctcctacagttggcacatctcctagctcattttattctggtcgt
gtacaatatggtggtgcaatgagtacatcctctccatacagaattccaaaaattactaaa
gtccaaggaagttcttcaaataaaacgaaaacttctggccagaagtcgtcgtcacaattt
acaggggctctgagttccacagcacgaaaaataatgcagactttagaaaaaatgtctact
cctcttcgtgatctgaagaagattcctcctcctgatacaagaacacccacttccttcatg
gctcgagcacacaggaaaaggaccatggatcacagtattaacagtccacagaaaaagcgt
gttcccccgacaaaaggccttacttctgttagtagtgcaattgttaccacatctgcaaag
atgccactcgacaacagtctggtcactaaatcgattgtgaaaaattttgtctcggagagc
cggcagactgcaaggaatttggcatcatctacaaaggaccatgttatacacagaggacag
cctgccgttgttgccacttactcatcttctgaaggcctgaagcacaattatgaggcatcc
agtggcggtggtggaggcaaaatgaaacatcagcgacgagcagttggacattattctgct
atttcacaaactccggagaagaacgtcttgccgccagttcccaacataactatgaacata
ccaacacttccttcctttgattttaacggtcctggcaacacttctacacctgcacctcca
aaattgagcaagattaatttagttaaaggaaaagagggagtggagcaaaaagatcatttt
gatctagaatttgtgttttctcctcctgctcctcgaccatcccctgtgaagaaatcccaa
cccactcctcagaagtcctcagtgacatttccatttaaatcaccccccgatgcatcaagt
aaagctgcaagtctttccagaacaactcagaagagtatggaccagtcttcatcagcacac
actaccaaaagcattcaaacgaagacccaagattttactccagtcaaagcaggcagtgtg
atggatattttgggtaaaggagataagatttcaaaaacaccgttagctcgggcgacagct
gtcagcacaactagttctgctatatcaaagccaccactgagtgaagtatttggaaaatca
aaggacaaatgggaatgtggaacttgcatgattatgaacagcaatgatcgtgacaaatgt
gaagcttgtcaaacaccaaaacccgaagcaaagtcttccaaagctgatagcaagccgttg
agtgaattgtttaagaaacctgcaggtaaatgggaatgtggtacctgcatgattatgaat
gataattcgcagacaaaatgtgaagcttgtcaaacacccaagccaggatcacagtcaagt
caaccgcctttgagtagcatatttcaaaagcaaaaagatagatgggaatgcggaacctgc
atgattatgaatgataacagtcgtagtaagtgtgaagcctgcgaaactcctaagccaggt
gccagtttagcctcaggttctgattctaaaccatttacgtttggcgcaccagcatcgcag
acaaagtcttcaactactttcacaagcaacttggctaactttaaaccatcagcaaagtcg
tcgttttcatttggagcgcctacgtcatctccaatcgtaaaatctctcgttaatttctca
gataaaaacaaatgggaatgcccaacctgtttgataacaaatgatcaaagtaggatgaac
tgcgaagcttgtaccaccccaaagcctggatctgaatctaaaagtgacaagaaaggccca
gcatcaggtattgttttcggaattaatcaaagcaagtcatcaaagtgggattgcaaagta
tgtcttgtaccaaatgatgccgaacgcacaaagtgtgttgcatgtgaaagcccacgcact
gatttgaagaacgattcttctgcaaattttcaaaaatcaacatttaaatttggaagtaca
tcatctaatgtggttaaatttggaatacctacaaaacccgaaaccaaaccaacgactact
tcaagcgaagaatccgtcactgctgctacctccgaaaataaaattgtcacaagtattgcc
ccaagcttcccagctggtattaagtttggagttcagcagccttctgttagcaaagaagag
cctaaacctgttgctagttttgtgactactgcagtctcaagcagtcctggtgctatctct
caactcttgttcggagcacctaaaacttctactaagccagcatctaccacaccatcattt
ggcaccccaacatctgtctcaagtcagccaactgcgtattctgtcaccaaaaagagaaat
cttgatgaaactgacagtacagtaatttctgctaagttgccaacatttggcgtaggaggc
aatcttaacactcagactggttccactgcctctctagttacaggattcaccctcactgct
ccaaaaaccacacaagctgtgcaacaaaaacctgcatttgcaggatttaatgtaggagca
aaacaaacatctgaaggctttggtgcaacgttaaatgcacaaaaacccgccacatctact
acccaaactccgtcaaccgcaccaccatttctgtttggaagtgtgacaaaaccagcttca
tctgtggttactacaacaacaacagcagcaaagcccgcattattttctggttttagttca
acgcagtcatcttttggagccccaccgcaatcatcagcaacaccgccttcattttccttt
ggaaaaactcccacctccaatgcaagtggctccactgtgaatgacagcagccaacctact
aaacttgggttttcgttcggatctactccagcttctactgcaccttcaaatggtatgttt
ggtaaagcagctgcaccagcttccaaccctacaatagataaacctccggtcttcggaagc
acaactgcaccggctactgggttttcatttggctctaatgcctcctcatctacaactaca
caaaaaggcagcggtatgtttagcacatcacagtcggttcccaagccaaccttcaatttt
ggagcatctgctgaaccagctcaaacaggtttccaatttgcctctaatccagctcagact
gctacaccagcaaaagcatttagttttggaaatagtggccaaaatcagtcggtgttttct
aatccatctgcttctacatcaggatttaacttcagtggtgcccaaaataaaccagcattt
tcatcaacacccggaacgtttcagtttggagccggcagcagcaatcctccgaaaccagat
tcaacaagcaccggttttcagtttaatgccaacccatcattacccacgccagcatttgga
agtaccctgggtgcatctccggcgccaaatgcagggggtatgtttagtattggtcaaagt
gatcctaacaaacagaatcgagcaactacccctgtacaaaatcgtcctatgcgaagagct
actcgtagactgagaaaataa
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