Clavelina lepadiformis (light-bulb sea squirt): 143447366
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Entry
143447366 CDS
T11416
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
clep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143447366
03015 mRNA surveillance pathway
143447366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143447366
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143447366
5.6.2.5 RNA 5'-3' helicase
143447366
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
143447366
mRNA cycle factors
Common to processing body (P body) and stress granule
143447366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
DEAD
NPHP3_N
ATPase
SLFN-g3_helicase
nSTAND3
AAA_16
NAT10_TcmA_helicase
AAA_22
AAA_26
SRP54
UvrD_C_2
PhoH
Motif
Other DBs
NCBI-GeneID:
143447366
NCBI-ProteinID:
XP_076803544
LinkDB
All DBs
Position
2:19346472..19358880
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AA seq
1110 aa
AA seq
DB search
MSSVDAYGPSSQTLTFLDTEDSDLLAAGGDTQASEYEFTDFTVPSQTQTQTQTQHSQASQ
VEVGDHSQTQDVPGEDAVGGLQESIHVATQGVADLCFEEEEDEDGFYTKDLPEHACRYCG
IHDPNCVVMCNSTRKWFCNGRGNTSGSHIINHLVRAKCKEVTLHRDGQLGDSVLECYNCG
CRNVFLLGYIPAKADSVVVLLCRQPCANQSSLKDMSWDASQWSPLIQDRCFLNWLVKIPS
EEEQMRARQITAQQINKLEELWKENGDATIEDLEKPGVDEEPQAVLLRYEDAYQYQNIFG
PLVKLEADYDRRLKESQTQANVGVRWDIGLNKKRLAHFQLPKTDSDMKLMKGDEISLRHL
GTSWEGKGHVVKVPDNFGDEIAMELRSSAGVPTEHTRNFQVDFVWKSTSFDRMQSSMKTF
AVDEASVSAYIYHRLLGHEVDEQSLKTNLPKRFSAPGLPELNHSQVYAVKTVLQRPLCLI
QGPPGTGKTVTSATIVYHLVKSCGQGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSR
EAIDSNVSFLSLHNQVRSMGSLPELQKLQQLKDETGELSSNDEKRYRALKRNAERELLQN
ADVICSTCVGAGDPRLVRFRFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAANAGLAQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGE
RMRKGLSFSWPSPDKPMFFYKTSGQEEIASSGTSYLNRTEAAVVERITTKFLKSGIKPEQ
IGIITPYEGQRSYLVQYMQYSGSLHSKLYMEVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRARFGVIIVGSPKALSKQPLWNHLLTYFKEQRALVEGPLGNLKES
LMQFSKPRKLTNVLNPGGRYMSTAMWDAREALIPGGAYDRTVNYNGNIPPRQQYYQTHDQ
IGMINPQASLQVQQVAASLPVPVNMYMNPAIPPNYFNGQQQGRPPRRAPRLSRNSRQAQA
GGASQQATQSQEMTQNFSQAPLTQGYGTGLSMSQPISQGMSQLGLSQAELSQDSYIGDEF
RSQVDAALSQDSTYQGERAYAGQGLNFSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtgtagatgcctatggaccaagttctcaaactttaaccttcttggatacagaa
gatagtgatctacttgctgctggtggagatacgcaggcaagtgaatatgagttcacagac
ttcactgtaccatcacaaacccagactcaaacacagacccagcatagtcaagcaagtcaa
gtagaagttggtgatcatagtcaaactcaggatgttcccggagaggatgctgttggtggc
cttcaggaaagcattcacgtggccacacaaggtgtcgctgatctctgctttgaagaggaa
gaagatgaagatggattctatacgaaggatcttccggaacatgcgtgcaggtactgtgga
atacatgaccccaactgtgttgttatgtgcaacagtactcgcaagtggttttgcaatggc
cgagggaatacttctggaagccatattataaatcacttggtgagagcgaaatgcaaagag
gttactcttcatcgagatggccagcttggagattcagtgttggagtgctacaattgtgga
tgcaggaatgtcttcctgctgggttatattccagcaaaggctgactctgtagttgtgttg
ctgtgcagacaaccatgcgccaaccagagcagcttgaaggatatgagttgggatgcctct
cagtggtctcctctcatccaggatcgttgtttcctcaactggctcgtaaaaattccatcg
gaggaagagcaaatgcgtgctcgacagatcactgcacagcagattaacaaactggaagag
ttatggaaggaaaacggggatgctactattgaagatcttgaaaagcctggtgtagatgaa
gaaccccaagcggttctgcttagatatgaagatgcctaccagtatcaaaatatctttggc
ccacttgtcaagcttgaagctgattatgatagaaggctgaaagaatctcagacccaagca
aatgttggtgtacgatgggatattggacttaataagaaacgcctggcacactttcagtta
ccgaaaacagattctgacatgaaacttatgaagggagatgagattagtttgcgacatctt
gggacatcctgggagggcaaaggtcatgtcgtgaaagttccggacaattttggagatgag
atagcgatggaactgcgatcatcagcaggtgtgccaactgagcataccagaaattttcag
gtggattttgtatggaagtcaacttcatttgacaggatgcaaagttcaatgaagaccttt
gcagtagatgaagcatcggtgtcggcatatatctaccacaggctgcttggacatgaagtt
gatgagcaatccctgaaaactaatttaccaaaaaggttttccgctccaggcttaccagag
ctcaaccattctcaggtatatgctgtaaagactgttctccagcgtccactttgtctcatc
caaggtccgcctggaactgggaaaactgtgactagtgcaaccatcgtctatcatctcgtc
aaatcctgtggtcaaggtcaagtgttggtctgtgcaccgagtaacattgctgtcgaccaa
ctaacagagaagattcatcgcacagggctgaaggtggttcgtctatgcgcaaagagtcgc
gaagcaattgattccaatgtttcatttctttccttgcacaatcaagtcagaagcatggga
tcactccctgaacttcagaagttacaacagttgaaagacgagactggtgagctatcatca
aatgatgaaaagcgttatcgtgctctcaagcgcaatgctgaaagggaactactgcagaat
gctgatgtgatttgctcaacctgtgttggcgctggtgacccacgcttggttcgattccgc
ttcagatcgattctcatagatgagagcacccaagccaccgaaccagaatgcatggttcct
gtggtgcttggagcaaagcagttgattttggttggtgaccactgccagttgggaccagta
gtcatgtgcaagaaagcagccaacgccggacttgctcaatctctctttgaacgtcttgtt
gtcctcggtatccgtccaattagattacaagtccagtacagaatgcatcctgccttgtct
gcctttccctccaacattttctatgaaggttctcttcagaatggtgtgactgcaggcgaa
agaatgagaaaaggtttaagcttttcatggccttcaccagacaagccaatgtttttctac
aaaacctcagggcaagaggaaatagcaagctcaggaacttcctacttgaaccgtacggaa
gcagcagttgtagaaaggatcacaacaaaattcctcaagagtggcatcaagccagaacag
attggaataatcaccccatacgaaggacagcgctcgtatcttgttcaatacatgcaatac
tctggctcattgcactccaaactttatatggaagtggaaattgccagtgtggatgcattt
caaggacgtgagaaggacttcattatattatcatgtgtcagggcaaatgaacaccagggc
atcggtttcttgaacgatcccagacgacttaacgtcgcgctaactcgtgcaagattcgga
gtgatcatcgttggaagtccgaaagcactttccaaacaacctctttggaatcatcttctg
acctacttcaaagaacagcgggcactggtggaagggccacttggaaacttgaaagagagt
ttgatgcagttttccaaaccacgaaaacttaccaatgttctaaaccctggagggagatac
atgagcacggccatgtgggatgcaagggaagcactgatacctggaggagcttatgacaga
actgtcaactacaatgggaatattcctccaagacagcagtactaccagacccacgaccag
attggaatgataaacccccaagccagcctgcaagtccaacaagttgcagcaagtctgcct
gtcccagtaaacatgtatatgaacccggctataccaccaaactacttcaatggacaacag
caaggtcgtccaccacgccgagcaccaaggttgagccgaaacagtcgccaagcacaggca
ggaggggcaagccagcaagcaacacaatcacaggaaatgacacaaaacttctcccaagca
ccactaactcaaggatacgggacaggactgtcaatgagtcaacccatcagccagggtatg
agccaacttggactctcacaagcagagttgtctcaggatagctacatcggggatgaattc
cgctcccaggtggatgctgcgctctctcaggactctacctatcagggagaaagagcatac
gcggggcaaggcctgaatttttcacagtattaa
DBGET
integrated database retrieval system
