Clavelina lepadiformis (light-bulb sea squirt): 143447490
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Entry
143447490 CDS
T11416
Name
(RefSeq) dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
143447490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clep04131
]
143447490
Membrane trafficking [BR:
clep04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
143447490
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
143447490
RAVE complex
143447490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_IFT122_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_VPS8
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
CFAP251_N
Beta-prop_NOL10_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
143447490
NCBI-ProteinID:
XP_076803738
LinkDB
All DBs
Position
2:17964727..17974986
Genome browser
AA seq
2992 aa
AA seq
DB search
MKRHQVLTGSVNPGSHCYSVGLVSDFTFWAYGSGCDLVISSSSQQPVQILSGHGNVLITA
VDCADCNGKVAVAYGKDIIIYNPVYQHSRTTSYKWVKESSFTLNENEGDAEILSWNSEGS
QLLVGSTVIGLWSYVYHFDETVTFHLDSSVIDEEPSKVVERIEWKHVWSSDFNEKPVQLS
FSPSKSEGQLFASVAQGECMIKVWYSYKQHKSHHKNPFLSHKKQTSLSSSLKEWSSKDID
FTFTYLLHPQPVVGFEWRKNFPLYGSERFSNVLISSSLDQICRIWVETKQPVSRLLRFQN
VGHDENTRKRKHQEDNAERFRKAQSSPVISSGLDVLFSNPLMDKTNYLDAHHFHIAATIN
PLADIPLPPSTVPNPKSSVDIDENTSIFTVHWLNNKYYQTQLLLNKFSTNASTTDTIPDK
LDNSFAVLGPDDASDDTSTISGVSDEMQLSHGVMEKLITSWRNSQDALFSIHPADGSLLM
WHIEYLDENRAGLIRQPLVCYSSRIPTVFSSGNAGTLCPRVILFVNHSTEQNILHSASYI
SFKSVNSLEKQSKAIIYSDMQLLSKHYDGSLNLWQLSFSDANDFSSVTSISHNSRFCGHC
FHLSGISPHPVLPLLLTSAIHVGKTHNSYTSKKWGLSELILWRVDTVGPLSYSGGLSELA
RVSCQKNHLFNNIAWFPVLFPTWCLGFNNNSPSTGLISLGNNTLQIYQVVAEASQVLADI
ISPGTESLNSNYQNLISQQSSANPGCLLHLLTVEDDGAQWGKTLFLGTFTDNIMSSKIKT
TSAKGLLPKFFKKYYAVMLEESSNDVFVHTWKITFLANFSHARGTRSRRTTVQLMDSSDD
ESDEEDIMEVPHSFPNVTVNVEKLSTQKLDVPYPAKVVSASSGRGSFDLFFTSDGDESIY
PAPFHICTACDNSQVYFWLCNIEQNENLLETCVWQLWEPAECTKKTQTDLSEVHISLQGI
PLVVKAANSNLLACMWHHGPDITSNTSLFITVYECASTGGLCWNEQDTITYMLPPGSLET
KDSNTLENLSFHLDWLSREEGSFFLVVGCGTNVQIFSLAPKDIKSQTPFNEKTNTTKSHG
QPLLKQSSLDVHTRQKLFTTSKVKHIQELSDFLNPPPDLKFDSQIHWRLLRWTKLVDLNI
RATDNISNATSSIQKSQAVTVSWARDGILIVATETEMHVFCQWISKSYDHSIGNAPQSIQ
MFMESEGINMSQGLSEFADKVCPSLPQYHPLVLSELMNSGHIDAVKEILIHLAICMNGDF
HDTTCSKEVPHVEKYQFSDQLAHILQLCASGNRITPLPLQELLSVNGKIISNFQASPSKQ
KSKPSESVATKNETLDTLDEILTLDDTLDKLSEDDDNELDEILGITTKKKKERSIEHIDL
SKLEEHYFGKEHCRVIHEFLVRNQLPGLTSLDQMELMALADTLEMTNTSHLRQTNNDDIT
QHGKSNTLGLSSGERGYAVSGGGAGALDNCGLRFVMAMHNHLCLLNSLPASNRKTLLKHG
LSSCQFAWAFHSETEEELLSMVPSIQQGTPDWSELKSLGVCWWIRSTILLRRLVEQMARA
AFLKKNDPLDAALFYLALNKKSVLCGLFRSVKDVRMNQFFQHNFAEERWHRAALKNAFAL
MGKQRFEHAAAFFLLAGSVCDAIEVCIDKLKDMQLALLIVRLRDNPDITYHQLLSQHVLH
DHDVSEEPKFNKSFKKTHSDSFQRSMAYWTLGKYDIAVSTLLEDLQYEDIADIFNFYAFL
RSHPIVLRNKAQSEDIHSIEKVDRDGVWQSVTEQERRLIFQTAVVHLEAGCPVLALDSLS
KLPKHLEVNQNVTLVGGTSSKDPDDLSKVSLNENVSVVEVDTLSKVECASDLDWSQPVGM
GMDEGLELDWSEDEGDEESDDASRPTMKVDVNINPSTPSMEDQTNSTTSAFHPKPKENDI
KSDQNELKVMTKQDVFAHHLRITASFKVFVQELKAIAHAYSTDGGQLRSKLYLWLENTSN
VLHDTFGTSKPDTDGCPAVAKHRPVFMLDPLTDSDDSTSVGSFGTKLGSSQAPSLHELIL
ADNQDWKTRRKALSRRKKWLQCHHNFLRTLLSYCNMHDSAHGLLATMRMELLLLLQESLQ
DKNMTRSLVSPLPSPSGSIPLITSSIASCKMVVADPLTYLCHMTRDVLRAILRISKPPHP
QDSSFSQDSIMLCSQAAALSTCIYQSLCDTSTPTYHTQLLKADTMSVEGVLENSGLGVSP
PNKYLQSSVLQQSPNTSEAFLYQAPTSVPAQWPGVAQMLAMLNSESLAAGSRTKIMVLLC
EATVSIFVSLLVHGLQTHNTSLLYRLCNHNLGGKMWNAVFGGGLKIHIKYSKSRSDLTQM
ASDDVRKLREKLNRRVLQPGDRKPSITSSGGNEALSYQEKFVPPEISLWDWFLTKPFKIP
LNEDEENFDSDAEDEDSDSVASFQDEEDIDEINFNFDHEEHPAYVDQTEPDSYGWKLMRF
VIVVVTTNIIQSFLCLAGFDINELNNTSALLSALLRTLHEWQEALCAELDLCQGPPPDFI
GAPIIPVFGTSPSRPEILKYQAMLEPSNTPFKKINRQGLGCRRLWRSLVKNESMQETFIK
YIFKKKISEDCEQTDGRATDQPVISAADLTNRPQYGGPVKILHKDTELLAAFCVNNVNSN
CIALASAKDIQEIDISDLLASDNWSWMDEPSMPPEHKNSGARDDDFLIVNPPKETKSAPN
LFTVGSSVPWTSTSQTGQGANVLMKRTVSGVRRMESHPSLPYYVTGHRDGGIYMWEWGHH
QQISQFEPAGQSSKVSNIHFSSLGNKICSADGDGFLTMWQVSSSQKPFFRHLCHDRGTSD
FCFVSSASILATAGISSNHRNVAIWDTLMPRRSILVKDFTVHEQAGASCIKYLAKYNTLL
VGGKNGVLSTFDNRCLHSPLHKFSAHDAPIKCLAVEQNERFYVTGSATGDVKIWDSLSHK
LLYASEHEHARSSLFRNFGSGTVQVMVTSEHLLTCGADGSLKMKLLPDSNLF
NT seq
8979 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagacaccaggttttaacagggtcggttaatcctggtagccattgctacagtgtt
ggcttggtatcagactttaccttttgggcttatggatctggttgcgatttagttatttcc
agttcaagccagcaaccagtacagattctatctggtcatggaaatgttcttatcactgca
gtggattgtgcagattgcaatggtaaagtagctgtggcctacggaaaagacattatcata
tataatcctgtttatcaacactctcgaactacatcatataaatgggttaaagagtcatca
tttactttaaatgagaatgaaggcgatgctgaaatattatcttggaattctgagggaagt
cagttgcttgttggatctactgttattggtctttggtcatatgtttatcactttgacgaa
acagttacattccatttggatagtagtgtaattgatgaagaaccatccaaagtggtagaa
cgtattgaatggaaacatgtctggagcagcgatttcaatgaaaaaccagtccagctttca
ttttcaccttcaaaatctgaaggacagttatttgcatcagtggcccagggtgaatgcatg
atcaaggtctggtattcctataaacaacataaatctcatcacaaaaacccattcctttct
cacaagaaacagacgagtttaagctcttcattaaaggagtggtcttccaaggatatagac
ttcacatttacttatttgctgcacccccagccagtagttggctttgaatggaggaaaaac
ttccccttatatggaagtgaaaggttttcgaatgtgttaataagttcatcacttgaccag
atatgcagaatttgggttgaaaccaagcaaccagtatctagattgttgcgattccagaat
gttggtcatgatgagaacacacgcaagagaaagcatcaggaagataatgctgaacgattc
agaaaagctcaaagtagtcctgtaatatcctctggattagatgtattattttcaaaccct
ttgatggataaaaccaattatcttgatgcccaccatttccatattgctgcaacaataaac
cctttagcagacattccacttccgcctagtactgttccaaatcccaagagtagtgtggat
attgatgaaaatacttcaatttttactgtgcattggctcaataataagtattatcaaaca
cagctgctgcttaataaattttcaacaaatgcttccacaactgacacgattccagataaa
ttggataacagctttgcagtgcttggccctgatgatgcatctgatgacacgtctaccata
tctggagtttctgatgaaatgcagttatcacacggtgtaatggagaagctgatcacatct
tggagaaattcacaagatgctttgttttccattcaccccgccgatggatcgttgttaatg
tggcatattgagtatctggatgaaaatcgggctggtttgatccgacaaccactagtctgt
tattcctctagaattcctacggtattttctagtggaaatgcaggtaccctttgtccgcgt
gttatcctcttcgtgaaccattccactgaacaaaatattcttcattctgccagttatata
agttttaagtctgtcaacagtcttgaaaagcagtcaaaggctatcatttattctgatatg
cagctcttaagtaaacactatgatggcagtctgaatttgtggcagttatctttttcagat
gcaaatgacttttcttcagtaaccagcatttcgcacaactctaggttttgtggtcattgc
ttccatctaagtggtatttcacctcatcctgtgttaccacttctgttgacttctgcaatt
catgtagggaagactcacaattcttatacatcaaaaaagtgggggttgagtgaacttatt
ttgtggagagttgacactgttggtcctctgtcttattcgggtggtttatcagaattggca
agagtgagctgccaaaaaaatcatctgtttaacaacattgcatggtttccggtacttttt
ccaacctggtgtttaggatttaacaacaactctccaagcactggtttaatttcacttggg
aacaacacactgcagatatatcaagtagtagctgaggcctcacaagtattagctgatatt
atttcaccaggaacagaaagtttaaactccaattaccaaaacctcatatcacagcagtct
tctgccaatcctggttgtttgctccatcttctcacagttgaagatgatggtgctcaatgg
ggaaaaactttgtttctaggcacatttacagataatatcatgtcatcaaagattaaaaca
acttcggctaaaggcctgttacctaaattttttaagaagtattatgctgtaatgcttgaa
gagtcatcaaatgatgtttttgttcatacgtggaaaattacatttttggcaaatttctcc
catgcacggggaactcgaagcagaaggacgacagttcagttgatggattcgtcagatgat
gagagtgatgaagaggatatcatggaagtaccccactctttccccaatgtcactgtaaat
gtagaaaagctttctacgcaaaaacttgatgtaccatatccagcaaaagtcgtaagtgct
agttcaggacggggatcatttgatttgtttttcacatccgatggtgatgaaagcatctac
ccagctccctttcacatatgtacagcatgtgacaatagtcaggtatacttttggctttgc
aacatagaacaaaatgaaaatttactggaaacttgtgtttggcaactttgggaacctgcg
gaatgtacaaagaaaacgcagactgacttaagcgaagtccatatatcactacagggcata
ccactagtagtgaaagctgcaaattcaaatcttttggcttgtatgtggcaccatggacca
gacattacttctaataccagcttgtttatcactgtttatgaatgtgcatcaacaggagga
ttgtgctggaatgagcaggatacaataacttacatgttgcctcctggaagtcttgagacc
aaagattcaaataccttggaaaatttaagttttcatcttgattggctttcccgtgaagag
ggttccttttttctggtggttggttgtggaactaatgtgcagatattttctttagccccc
aaggacattaagtctcagacaccttttaatgaaaaaacaaatacaaccaaatctcatgga
cagcccttactaaagcagagctctcttgatgtacatactcgacaaaaactgtttactaca
agcaaggttaagcacatccaggaattatcagattttctcaatcctcctcctgacttgaag
tttgattcacaaattcattggaggttgctgcgttggacaaagcttgttgacttgaacatc
agagcaacagacaatatctcaaatgcgacaagtagcattcagaagagtcaagctgtgact
gtgtcatgggctcgcgatggtattcttattgtagccacagaaacagaaatgcatgttttt
tgtcagtggatctccaaaagttacgatcacagtattggtaacgcgccacaatctattcag
atgttcatggaatctgaaggaataaatatgtctcaaggtttgtcagaatttgcagataaa
gtgtgcccatctctgccacaataccatccgcttgttttatcagaactaatgaacagtggc
cacatagatgcggtaaaagaaatcttaatccatcttgcaatttgtatgaacggtgacttc
catgacacaacctgctcaaaagaagtgccgcatgttgagaaatatcaattctctgatcaa
ctggcacatatcttacaattgtgtgcatcaggaaacagaataactccccttccattgcaa
gaactacttagtgtaaatggaaagattatcagcaatttccaagcgagtccaagcaaacag
aaatcgaaacctagtgaaagtgtagccacaaaaaatgaaaccttagatactctcgatgaa
atactcactttggatgacactcttgataaattgagtgaagatgatgataacgagcttgat
gaaattttagggatcactacaaagaagaagaaagaaagatcaatagaacatattgacttg
tccaagcttgaagagcattactttggcaaagagcattgtcgcgtcatacatgagtttctg
gtgcgaaatcaacttccaggattaaccagtctagatcaaatggagttaatggctcttgct
gatacccttgaaatgaccaacacgtcccatttaagacaaaccaacaatgatgatattacc
caacatggaaaatccaacactttgggtttaagttctggggaaagaggatatgctgtctcc
ggtggtggtgctggagcactggataattgtgggcttcgttttgttatggcgatgcacaat
cacttgtgcctgcttaattctctgcctgctagtaaccgaaaaactttgttaaaacatggt
ctcagttcctgccaatttgcctgggcatttcactctgaaactgaagaagaacttctgtca
atggtaccaagtatccagcagggtacaccagactggtcagaactgaaatctctgggagtt
tgttggtggataaggtctacaattctgcttcgacgcttagttgagcaaatggctagagct
gcctttttgaaaaagaatgatccccttgatgcagccttgttttatttagccctgaataag
aagtcggtgttgtgtgggttgtttagatctgttaaagatgttcgaatgaaccagtttttt
cagcataattttgctgaagaaagatggcatcgtgctgcattaaaaaatgcttttgctctc
atgggcaaacaaagatttgaacatgcggcagcattttttttgcttgcaggatctgtttgt
gatgccattgaagtttgcattgacaaattaaaggacatgcagctggctttgttaatagtt
cgccttcgtgataatcctgacataacataccatcagcttcttagtcaacatgttttacat
gatcatgatgtcagtgaagaaccaaaatttaacaaaagctttaagaagacacactctgat
tcatttcaaaggagcatggcttattggacactgggcaaatatgatattgcagtcagtaca
ctcttagaagatcttcagtatgaagatattgcagatatattcaacttttatgcctttttg
cgttcacatcctattgttctgaggaataaagcacaaagtgaggacattcactccatagaa
aaagtagatagagatggggtgtggcaaagtgtgactgaacaagaacgtaggctgatcttt
cagactgctgtagtacatttggaggcaggttgcccggtgcttgccctggactccttgtct
aagctacccaagcacttggaggtcaatcaaaatgttacattggttggtggaacctccagc
aaagatccagatgatttgtccaaagtttctttgaatgaaaatgtatctgttgtagaagtt
gacacattgagcaaagttgaatgtgcatcagatctagattggagtcaaccagtgggtatg
ggcatggatgagggtcttgaacttgattggagtgaagatgagggggatgaagagtcagat
gacgcatctcgacctacaatgaaggtagatgtcaacataaacccaagtactccaagcatg
gaagatcaaacaaactcaactacatccgcttttcatcctaaaccaaaagagaatgatatt
aaatctgatcaaaacgaactgaaagtgatgacaaaacaagatgtatttgcacaccatctt
cgcataactgctagctttaaagtgtttgtacaagagttaaaagcaattgctcatgcatat
agcactgatggtggacagttaaggtcaaagctctacttgtggttggaaaatacttcgaat
gttttgcatgatacttttggaacatccaaaccagacacagatggttgtcctgctgttgca
aaacatagacctgtttttatgttagatcctctaactgattctgacgattctacttcagtt
ggtagctttgggacaaagttaggttcatcacaagcaccatcattacatgaacttatactt
gctgacaatcaggactggaaaacaagacggaaagcactatctcgtcgaaaaaaatggctg
cagtgtcatcataattttctaagaactctcctgtcatattgcaatatgcatgattcggcg
catggtttacttgcaactatgaggatggaactacttctattgttacaagaatctttacaa
gacaaaaatatgacaagatccttggtatctcccttaccatcacccagtggaagcattcct
ttaattacgtcaagtattgcatcttgcaaaatggttgtggctgatccacttacttacctt
tgtcatatgacaagggatgtgcttagagcaatacttcgtatttccaaacctccacaccca
caggattcctccttttctcaggacagcattatgttatgcagtcaggcagccgcactttcc
acatgtatttatcaaagtctgtgtgataccagcactccaacttatcacactcaactgctt
aaagcagacacaatgtctgtggaaggtgttttagaaaactcaggccttggtgtgtcaccg
cccaacaaatacttgcaatcctcagtattacagcagtcaccaaacacttcagaggctttc
ttgtatcaagcacccacctctgtacccgctcaatggccaggtgttgcccaaatgctagca
atgcttaattcagagtcacttgctgcaggaagcagaactaaaataatggttcttttgtgt
gaagcaacagtttccatctttgttagccttcttgttcatggcctacaaacccacaacacc
tctttgctgtatagattgtgtaaccacaatcttggaggaaagatgtggaatgctgttttt
ggaggaggactaaagatacatatcaagtactcaaagtcacgctcggacttgacccaaatg
gcctcagatgatgtaagaaagttaagagagaagttaaatcgtagggttctacaacctgga
gatcggaaaccaagtataacgtcttcaggaggtaacgaagcgttatcatatcaggaaaag
tttgtaccacctgaaataagtctctgggattggtttctcacaaagccattcaaaattccc
ctgaacgaggatgaagaaaacttcgattctgatgccgaggatgaagattctgattctgtc
gcttcattccaagatgaagaagatatagatgagatcaactttaactttgatcatgaggag
catcctgcttatgtggatcaaacagaaccagattcgtatggttggaaactcatgaggttt
gtgattgtggtggtgaccactaacatcatacaatcgtttctttgtctagctggatttgat
ataaatgaactcaataatacgtcagcattactttctgcattgctgcgaactcttcatgaa
tggcaggaagcgctttgtgctgaactagatttatgccaagggccgcctccagattttata
ggagccccaattattccagtttttggcacttcaccttctcgtccagaaattttaaaatat
caagcaatgctggaacccagcaacactccattcaaaaagattaacagacaaggtttgggc
tgtaggagattatggcgcagtcttgtgaaaaacgaaagtatgcaagagacttttatcaaa
tacatttttaagaagaagatctctgaagattgcgagcaaaccgatggtagggctacagac
caacctgtaatttctgccgctgatttaacaaacaggccacaatatggaggcccagttaaa
attttgcacaaagacactgagcttttggctgcattttgtgtcaataatgtcaactcaaac
tgtattgctctggcatctgctaaagatattcaggagatagatatatcagatcttttggcc
tctgataactggtcatggatggatgaaccatctatgccaccggaacataagaactctgga
gcaagagacgatgattttttgatagtaaatccacccaaagagacaaaaagtgctccaaat
ttgtttacagttggttcatcagtgccctggacatcaacaagtcaaactggccagggggca
aacgttttaatgaagcgaacagtgtctggggttcgcagaatggagtctcatccaagctta
ccatactatgttactggtcatcgagatggtggtatctacatgtgggaatggggtcaccac
cagcagatatctcaatttgaacctgctggacaatcttcaaaggtttctaatatacatttc
agttctcttggaaacaaaatctgctcggcagatggagatggttttcttactatgtggcaa
gttagctcaagccaaaagccctttttcagacatctttgtcacgaccgaggaactagtgac
ttttgctttgtctcatctgcaagtattcttgctactgctggaatttcaagtaatcatcga
aacgttgctatctgggacacacttatgccaaggcgaagcattctggttaaagatttcact
gttcacgaacaagctggagcatcatgcatcaaatatcttgcaaaatacaacactctgctt
gtgggaggaaagaatggtgtcttgagtacatttgacaatcggtgcctgcacagtcctctg
cacaaattttctgcacatgatgccccaataaaatgccttgctgtagaacagaatgagcga
ttttatgtgactggttcagcaacaggagacgtgaaaatatgggactcgttgtctcataaa
ctactttatgccagtgagcatgagcatgctcgttcgtctcttttcagaaactttggctca
ggaacggtgcaagtcatggtgacgtcagaacatttattaacctgtggtgcagatggttca
ttaaagatgaagttactgccagacagtaatttgttttga
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integrated database retrieval system
