Clavelina lepadiformis (light-bulb sea squirt): 143448816
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Entry
143448816 CDS
T11416
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04137
Mitophagy - animal
clep04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
143448816
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
143448816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clep04121
]
143448816
Enzymes [BR:
clep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
143448816
Ubiquitin system [BR:
clep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
143448816
Multi subunit type E3
ERAD complex
143448816
LMBR1L-GP78-UBAC2 complex
143448816
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-C3HC4_2
CUE
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-rbx1
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-C3HC4_4
zf-RING_16
Prok-RING_4
RING_XB3-XBAT31
LPD39
zf_RING_Vps8_fungal
zf-RING_Vps41
PHD_NSD
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
143448816
NCBI-ProteinID:
XP_076804821
LinkDB
All DBs
Position
3
Genome browser
AA seq
808 aa
AA seq
DB search
MPTIVFRRFPLPSISLYVILSIALLVLSVIWANNTLIEEQDVIALNKTSTSLMHSEPVKP
NDNDKESKEDELSEVWNYPSAKSGKNSESSITFSVKKSTLKSPDEPFIGTEIAKSINAGN
YSFSYGVFKLMMEEPLCLILVVNATYCVLALVMRVIQTLVFGKLRPIERQHLKDKFWNFV
FYKFIFIFGVMNVQSLNEVLVWVSWFTVIAFLLFLTKLSKDRFEFLSFSPNTPMSFHWKV
VVLLMFMLCSCILLAISCVTSTFPFSAASSINQDIHSITFMLAECVILSIKTTHVILRYS
IHLYDVQHAELWERKATYVYHTDLIMELLSLFVNFLHHLHMLFSGNIWLSMASLVICMQL
RYIFSEIRKRLLKHKNYRRVVANMEAQFPAATQEEINTHADRCAICWDQMESARKLPCGH
FFHAACLRSWLEQDTTCPTCRKQLDIQNNVRANRVNNIIPNDDNDNAANVPGGRVPPPQL
AAGLNPLLRIGRHRNFWHFDGSRFASWLPSFSVEVMHSAHGAQAMVTTTRQNSLNEEMSN
SQLDTMVREVQEIFPQIPARAIANDLRITGSVEVTSENILEGNIALPDPLVQTRQASLQP
TNSQSDYQRPMPSNPDQNPDSLLRRRNVSTFSTSDHLIPRLPSSVLAHPLTPSISAPGDV
GTSSSISPVTAPITPGGAIGGHFSKAPHEREIVLSSRREMLVRQARLKYLNNQKQLPMSD
EEDTSKVAPSSSTEHTFQIGSLNTNLLGQANADAGTSFQNPPFQDNLMQLATTSGSSSSA
RGILPRRSIREVSQGNLTDGDTSDESLD
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccattgttttccgaagatttccactgccaagcatatcattatatgtcatacta
agtatagccttgttggttttgtcagttatttgggccaataacacactcattgaggaacag
gacgtcatagctcttaacaagacatctacatctctaatgcacagtgaaccagtcaaacct
aatgacaatgataaggagtctaaagaggatgaattgtcagaagtatggaactatcccagt
gctaaatctggcaaaaatagtgaatcttcaataacgttttctgtcaaaaagagcaccctt
aaatcaccagatgaaccttttattggaactgaaattgcaaaatcgataaatgctggcaac
tactccttttcctatggggtcttcaaattaatgatggaagaaccattgtgtcttatactt
gtagtaaatgcgacatactgtgttcttgctcttgtgatgcgagtgatccagacacttgtg
tttggaaaactgaggcctattgaaagacagcatttgaaggacaaattttggaattttgtc
ttctataagttcattttcatatttggtgttatgaatgtccaatctttgaatgaggttttg
gtatgggtctcctggtttactgtgattgcatttttattgtttctcaccaaactatcaaag
gatcgttttgaatttctttccttttctccaaatacaccaatgagttttcactggaaagtt
gttgtccttctgatgtttatgttatgttcatgcatccttctggcaatttcctgtgtcaca
agtacatttcccttctctgctgcttcttcaattaatcaagacattcactcaatcactttt
atgttagcagagtgtgtgatcctgtcaataaagactacacatgttatactgcgttattct
atccacttatatgacgtgcagcatgcagaattatgggagcgaaaggcaacgtatgtatac
cacactgacctcataatggaactgctttctctgtttgtgaattttctgcatcacttacat
atgttattttctggaaatatttggttgtcaatggctagtttggttatttgcatgcagctg
cgatatatattctccgaaattcggaaaaggcttttgaaacacaagaattatcgaagagtt
gttgcaaatatggaagcacagtttcctgctgctacgcaagaagaaataaatactcatgcc
gatcgctgtgcaatctgttgggaccaaatggaaagtgcaaggaaacttccatgtggccat
tttttccatgctgcgtgtcttcgttcttggctggaacaagacacaacttgtcccacttgc
agaaaacagctggatatacaaaacaatgttcgggctaacagagtcaacaatattattccc
aatgacgacaatgataatgctgccaatgtccctggaggaagggtgcctccgcctcaatta
gctgctggcttgaaccctcttctacgcattgggcgtcatcgcaacttctggcattttgat
gggtcaaggtttgcgagttggttacccagcttttcggtcgaagtaatgcactctgcccat
ggagcacaggcaatggttacaacaaccagacaaaactctctcaatgaggaaatgtccaat
tcccagctggatactatggttcgggaagtgcaagaaatatttccccagataccagcacga
gctatagcaaacgatttacggatcactggctctgtggaagttacttcggaaaacatttta
gaaggaaacattgctcttccagatccattagttcagactcgacaggcatctctgcaacca
actaacagtcagtcagactatcaaaggccaatgccatccaacccggatcaaaatcctgat
tctttgttgcgacgacgaaatgtatcaactttttccacatctgaccatttgattcctaga
ctgccatctagtgttcttgcacatcctctgacacctagcatatcagctcctggtgatgtt
ggcacttcgagcagcatttctcctgtaacagctcctataacaccaggtggagcaattggt
ggacatttttcaaaagcacctcatgaacgagagattgttctgagtagcaggagagaaatg
cttgtgcgtcaggcaaggcttaagtacttgaacaatcaaaagcagctaccaatgtcggat
gaggaggacacatcaaaagtggcaccaagctcctcaactgaacacacgtttcaaataggt
agtttaaacactaatttgctggggcaagcaaatgctgatgcgggaacgtcttttcaaaat
cctccttttcaagataacctgatgcaattggcaacaacatcaggctcttcaagtagtgcg
cgtggaattcttccaagaagatcaatacgtgaggtgtctcaaggaaaccttacagatggt
gatacctcagacgaatcacttgattaa
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