Clavelina lepadiformis (light-bulb sea squirt): 143449299
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Entry
143449299 CDS
T11416
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
clep03015
mRNA surveillance pathway
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143449299
09122 Translation
03013 Nucleocytoplasmic transport
143449299
03015 mRNA surveillance pathway
143449299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143449299
03041 Spliceosome [BR:
clep03041
]
143449299
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143449299
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
143449299
Spliceosome [BR:
clep03041
]
Complex C
Other components
EJC/TREX
143449299
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143449299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
143449299
NCBI-ProteinID:
XP_076805556
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All DBs
Position
3:15846390..15851419
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AA seq
423 aa
AA seq
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MTDAEELLDYEEEEHETTQEIGASKEQKKDVKGTYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRE
LAFQISKEYERFSKYMPSSKVAVFVGGLSITKDQTTLKSNCPHIVVGTPGRLLALIRSKS
LNLKNIKHFILDECDKMLEQLDMRRDVQDIFRITPHEKQVMMFSATLSKDIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQRCVALA
QLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNEVQDRFEVNVTELPDEIDISAYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgcagaagaacttttagactacgaagaagaggaacatgaaactacacaagaa
attggagcgtccaaagaacagaagaaagatgtcaaaggaacgtacgtttcaattcacagt
tcagggtttagagatttcttattgaaacctgaacttcttcgagctattgtggattgcggt
tttgaacatccttctgaagttcagaatgaatgtattccgcaagctgtgcttggaatggat
gttttatgccaagcaaaatctggtatgggcaaaactgctgtttttgtacttgcaactttg
cagcaacttgaaccagtggatggacaggtttctgttttggtgatgtgccacactagagag
cttgcttttcaaatcagtaaagaatatgaaagattttctaagtatatgccatcgagtaag
gttgctgtatttgttggtggcttgtcaattactaaagatcaaactaccctgaaaagcaat
tgccctcatattgttgttggaactcctggtcgattacttgcactaatcagatcaaaatca
ttgaatttgaagaatatcaaacactttattttagatgagtgtgataaaatgttggaacaa
cttgatatgcgtcgagacgttcaagacatatttcgtataactccacatgaaaagcaagtg
atgatgtttagtgccaccttgagcaaagatattcgacctgtctgcaagaagttcatgcaa
gatcctatggaagtctatgttgatgatgaagctaaactgactctccatggattgcagcag
cattatgtcaagctgaaggacaatgagaagaatcgtaaactctttgatcttttagatgca
ttggagtttaatcaagttgtaatatttgtgaaatctgtgcaaagatgtgttgcgttggct
cagcttctgaaagagcaaaactttcctgcaattgacattcatagagcaatgaaccaagaa
gaacgtctcagccgataccaactttttaagaatttcgagcgtcgtattctggtggccacg
aacctgtttgggcggggtatggacatcgaaagggttaacattgtgttcaactacgacatg
cccgaagactcggatacttatctacacagagtggcacgtgctgggcgttttggtaccaaa
ggtcttgcaatcactttcgtatctgatgaaactgatgcaaaaacactgaatgaagtccag
gatagatttgaagtgaacgtcacagaacttcctgatgaaattgatatatctgcttacatt
gaaggtcgttaa
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