Clavelina lepadiformis (light-bulb sea squirt): 143449970
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Entry
143449970 CDS
T11416
Name
(RefSeq) nephrocystin-4-like isoform X1
KO
K16478
nephrocystin-4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
clep03037
]
143449970
Cilium and associated proteins [BR:
clep03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
143449970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPHP4_C2_3rd
NPHP4_C2_2nd
Ig_NPHP4_1st
Ig_NPHP4_2nd
Ig_NPHP4_4th
Ig_NPH4_3rd
NPHP4_SK
Motif
Other DBs
NCBI-GeneID:
143449970
NCBI-ProteinID:
XP_076806446
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All DBs
Position
3
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AA seq
1389 aa
AA seq
DB search
MIGTKNDNSETGQNGTWYDIIEKWKEVEISREHVSDDVSTGYQFNLQSVTGHLNLNTPDA
YNLEYEIRLTLFDVLYGRFIGRTWRSRKVRSTQSEEQGQHSQIKLDLPVYFHTPILDSTI
LLVIEIVTYLTPKNPLPGQENVTKQRSLGWGVLRLFQSGVLIKDISDGGEIPTRRLDVYQ
GSPRALLYMKDPIESDPQIKLVPGCQITLTFSRHIAMNTIMHLMPENVLYGADEKLPGMA
ESYTKHGDIHDYFWKPRLMKQCVGYIDKLSINLGTTIERFEDELCKLANYDRLKREKLTD
DGKSVAVSERKLMIGVHNGFCYIQKPQFAQVEPEALVGGTKMGSFGRGKRKDPSLISLSS
STNLVLRSRIQLNEMIPHSKVAIVFQLEYILSLPAPQSNVTGSVSSLRSQPSKIMVRWAS
WTPYTLSRLPEQPVTVTLNGGLSANPDSLLFYKVQKNQDGLNNNGSIKFRYLTSDQPIAN
STSIVGQSVLSNEPVIGTTQLHAPDVVQVKEPDDSYSVEIAHLEMAGDQHPVHAPPIQPI
AQSSIPTLTRASYARLYNAGFPEILDRKGLLPQIIDANDLMFRFNLEKEITDPLQTNEVC
VQFLAFTTPVQSPAEAPPPTMNSIFLSFQFYRFRPVTTQRLSLVRKTDSDGRYNDKAPCI
LRKIEAGEQLDEGQPGLEVKYHVDPVHMKAGENSAFLKYLATHYLHIDVWNGESLLLMGS
LSVPLKHLLRGGNSAVCVNHEVDVVFSEHSDVAPTFTGDLSKGGSVRPLGLSKQYRGRLH
LRLGNVGYPSEDKSSIRMKKSPLVVADLTGCAFHGGSLTFALQNSGSVRANRCKGRKMIE
SNSELSELLLLNATRNEEGDKENAEAGKGMDADRQRKISRMNAVRNLEDENGGKPQTKIG
QRALLNRQEKSLKERDLKTISSYRERLKSEHIMEMLMLSITTKHTIRPTLGIAEFVELKL
KNPFTTQQTVSIECNSTDFRVVTDSREWRYFKGLAGLHTPVEENMFNFDPNSSLPQIYLR
PKETVYIPFRYQSYEADHEVATQGPGHFFKPTPTSLQPVKDQHSHGTIKSKVVKAILRTS
DGRPLSILQLTVDPQPHVVDQTFRFYNPEQTFLKKCIRLPPFNNNSDHQFHVVCSDPEIV
CQARSLSRDEPREVFLKAPCGNSPSVRRFFLAIYNDPFLAIPAQIWQFYVHSLQRIDVNS
VLGQTSRFSLVLRGTQTAPMVQCFSSHPKEMQLSPSERFLLPANGVYEVNAGVRTTSVNS
NTKYMYVNVVDTEYHQLIRTWLVAVKAREPMIAKEFDIELSRSGGKGNNKMITYTNPYPN
RKKFVLMTSRSDLLHFRDVNMELGPGEKTTIGLRFASGVAQSGRFPVHIFINDLEDKNEE
TFLINVTYV
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgataggtacaaaaaatgataattcagaaactggacaaaacggaacgtggtatgacata
attgaaaaatggaaagaagttgaaatatcaagagaacatgtatcggatgatgtgtcaact
ggatatcaattcaatctccagtctgtgactggtcatcttaacttgaataccccagatgct
tataacctggaatatgaaatccgcctcacattgtttgatgtattgtatggccgttttatt
ggcaggacatggcgaagcaggaaagtccgatcaacgcaaagtgaagaacagggtcagcat
tctcaaataaagcttgatctgcctgtgtattttcacacacccattcttgattcaaccatt
ttgctggtcatcgagattgtcacctatctaactccaaagaacccactaccaggacaagaa
aatgtcacaaaacaacgatcattaggatggggagtattaagactttttcagagtggagta
ctgataaaagacatcagcgatggtggagaaataccaacaaggagattggatgtgtatcaa
ggttctccccgggctcttctgtacatgaaagaccctatagaaagcgatcctcagataaag
ttggtgccaggatgccagataactttaacatttagtaggcacattgcaatgaacaccatc
atgcatctaatgccagaaaatgttctctatggagctgatgagaaacttccaggaatggca
gaaagttatacaaagcatggagatattcatgattacttctggaaaccgaggctgatgaag
caatgtgttggatacattgacaaactttccatcaatcttggcacaaccattgagagattt
gaggatgaactctgcaaattggcaaattatgacagacttaaacgagagaaacttaccgac
gatgggaagtctgtagccgtctcagaaagaaaacttatgattggagtccacaatggattt
tgctacatccagaagcctcagtttgctcaagtggaaccggaggctctggtcggtggaaca
aagatgggaagttttggaagaggcaagcgaaaagatccttcattaataagtttatcgtca
agtaccaatctagtgttgcgaagtcgcatacaactcaatgagatgattccccactcgaaa
gttgccatcgtgtttcaacttgaatacattctgtctctacctgctccacaaagtaatgtg
acaggttctgtgtcatcacttcgttctcaaccttctaagataatggtcaggtgggcctct
tggacaccatataccttaagcaggttgccagaacaaccagttactgtcaccttaaatggt
ggcttgtcagcaaatcctgacagtcttctcttttataaagttcaaaagaaccaagatgga
ctgaataataatggttcaataaagttccgttatctaacttccgaccaaccgatagcaaat
tcaacatcaattgttggtcagtctgttttatcaaatgaacctgttattggtacaactcaa
ttgcatgcaccagatgttgttcaggtgaaggaaccagatgattcatacagtgttgaaatt
gctcacttggaaatggcaggagaccaacatccagttcatgctccgcccatccaaccaatt
gcacaaagcagtataccgaccttgacgcgtgcgtcctacgctcgactttataacgctgga
tttcccgaaatccttgatcgaaagggtttgcttcctcagattattgatgcaaacgactta
atgtttaggtttaatcttgaaaaagaaatcacagatccactgcagaccaatgaggtttgt
gtccaatttctggcattcacaactcctgtgcaaagcccagcagaggctccacccccgaca
atgaactccatctttttgtcattccaattctaccgctttcgaccagtcacgactcagcgc
ttgtcactagtcagaaaaaccgactcagatggtcgatacaacgacaaggcaccttgtata
ctgcgcaaaattgaagcaggggaacagctggatgaaggtcagcctggacttgaagttaag
tatcacgttgatccagtccacatgaaggcaggtgaaaacagcgctttcttaaaatacctc
gcaactcattatctgcacattgatgtttggaatggagagtctcttctcttgatgggatcg
ttatcagtcccgttaaagcatcttcttcgagggggtaattctgctgtttgtgtaaaccat
gaagtggatgttgttttctctgagcacagcgatgtagctccaacattcacaggggacttg
agcaagggtggaagtgtgcggccattaggattaagcaaacagtacagaggccgacttcac
ctaagattgggtaatgtgggatatccatcagaagacaaatcatcaataagaatgaagaaa
agtcctctagtggtggcagatcttactggatgtgcgttccacggtggatcattaacattt
gctttacaaaattctggttcagttcgtgctaatcgatgcaagggaagaaagatgattgaa
tccaattctgagttatctgaacttctgctgcttaatgctacaagaaatgaagaaggtgat
aaggaaaatgctgaagctggcaagggtatggatgcagacaggcaacgtaagatttctcgc
atgaatgctgttcgcaacctggaggatgaaaatggtggaaaaccacagacaaagattggc
caacgtgcattgttgaacaggcaagagaaatcgctaaaagaacgcgatctgaaaacaata
tcctcataccgtgagagattaaaatcggagcatattatggaaatgttgatgctgtcaatt
accacaaagcacacaattcgtccaactctgggtattgctgagtttgttgaactaaaactg
aagaatccatttacaacccaacaaactgtttccatcgagtgtaattcaacagatttcagg
gtggtcactgattcaagagaatggagatattttaaaggccttgccggtttacacacccca
gttgaggaaaatatgttcaactttgatccgaatagttcgctacctcagatttaccttcgt
ccaaaggaaacagtatacatcccatttcgctaccaaagttatgaagctgaccacgaggtg
gcaactcaaggacctggtcatttttttaagccgactcccacttctctccagccagtcaaa
gatcaacatagtcatggcaccatcaagtccaaagttgtgaaggcgatcctacgaacaagt
gacggaaggccactttctatccttcagctgacagtggacccacaacctcatgtggttgac
cagactttccgattttacaacccggagcaaactttcttgaaaaaatgcattagactcccc
ccatttaataataactctgatcatcaattccatgtcgtatgcagcgatccagaaattgtt
tgccaagctaggtcactcagccgtgacgagccgcgggaagttttcttaaaagcaccatgt
ggtaattccccgtctgtaagaagatttttcctggccatttataatgatccgtttctcgcc
attcctgcccaaatatggcaattttacgtccactctctccagcgcatcgacgtgaattcc
gtgttgggacagacaagccggttctctttggtgctgcgaggaacccagaccgcccccatg
gtgcaatgcttctcttcccatccaaaagaaatgcagctctcgccgtccgaaagatttcta
cttccggcaaatggcgtatatgaagtcaatgccggtgtacgaaccaccagcgttaattcc
aacaccaagtacatgtacgttaacgtggtggacactgaatatcaccagcttataaggacc
tggctggttgccgtgaaagcaagggaaccaatgatcgcaaaggagtttgacatcgagtta
tcccggtccggcgggaagggaaacaataaaatgatcacgtacactaatccatacccgaac
cgaaagaagtttgtgttgatgacaagcagatcggatctcttgcatttccgtgacgtgaac
atggagctcggacctggggagaagaccacaatcgggttacgatttgcgtccggtgttgct
cagtctggtagattcccagtccacatcttcatcaatgacctggaggacaagaacgaagag
acatttcttatcaacgtcacttacgtttga
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