Clavelina lepadiformis (light-bulb sea squirt): 143449972
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Entry
143449972 CDS
T11416
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143449972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143449972
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
143449972
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
eIF2A
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_SCAP
Beta-prop_WDR41
PEP5_VPS11_N
PROPPIN
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_WDR11_2nd
MoCoBD_1
Motif
Other DBs
NCBI-GeneID:
143449972
NCBI-ProteinID:
XP_076806449
LinkDB
All DBs
Position
3:complement(19346849..19351564)
Genome browser
AA seq
880 aa
AA seq
DB search
MATMYPNPHPMQASAQGGGDVPPPGMRYQARTYQPYVFQPNFLKQQMRQRELEKAAHLGQ
LGDGSAQALQLGLGQNLPFATSSRSLPQNILDDASRKKSGRKVIDWTSSCAIYLERRRWQ
RVVEDIPSLLPDTSYSIEMQATMAYKDNSASSVATKFVRSATNKMKCPVYKVVWTPDGRR
LVTGSASGEFTLWNGTAFNFETILQAHDSAVRAMSWSRNDTWLITGDNQGYIKYWQLNMN
NVKMYQAHKDQACRSVCFGPTDSKFVTASDDGTVRVWDFVRCREEHILRGHGSDVKQVDW
HPQKCIIASASKDLQTPVKLWDPRSGQSLATIHAHKGTVMDVKFNRNGNWFLTASRDHLI
KLYDIRNLKEEKQIFRGHKKEAFSVAWHPIHEDMFASGGSEGSIMYWQVGEDKEIGGLEG
AHDSLIWSLAWHPLGHILVSGSNDHSTKFWTRNRPGDQMKDRYTLLDDSNATSKTTPSSS
SNDKSTEVTSIPGMGDTDAAAAEIAKRDAERTKSGIPGLDWSFEEKNEFDRKIIAAQNDN
RKKIPYTRPVPRSFAAAWESNKEGAPRRSRSPSPNRYEEQYGWRRNDRPPPRIHRPHLRG
EMRSSEDYIPMERGMEEFVEVRRPLLEHPPDPEGRLPPADYPPPSGPPRRPSLNDQPRNI
DYEQDPREQSQDYYPEDKSYHEPRPMPPHPDNGIYNEQNHIVGEYPNQQEYEEFGGPIEN
NVNFHNEDRGLRPSRGRYGPPRGRGRVFPRESMPERVDWHESGNEDQQFSQDYLPGNQDG
YCQTDNNYIGREHGAGGTYNLIEQEELAYNKLEMQLKHGGPLLGRGMNHPRRPFRGHGPP
RVRGRGTGRGAPRYLLEHDGAPRGRPPNRMRRGMRRPMFQ
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatgtatccaaatccccatcctatgcaagcatcggctcaaggtgggggtgat
gtgccaccaccagggatgagataccaagccaggacctatcagccctatgtcttccaaccc
aatttccttaagcagcaaatgagacagagagagttggagaaagcggcccatcttggacag
ctcggagatggatctgctcaagctctacagcttggtcttggtcaaaatttaccgtttgct
accagcagtcgatccttgccacagaatattttagatgacgcaagcagaaaaaaatctgga
aggaaagtgatagattggacgtcatcatgtgcaatttatttagagaggaggcggtggcag
agagtagtagaagacattccttcgctgcttccagatacatcatactctattgaaatgcag
gcaacaatggcatacaaagataactctgcctccagtgtggccacaaagtttgttcgaagc
gccactaataaaatgaaatgtcctgtttacaaggttgtctggactccagatggtcgtagg
ctagttacaggttctgcaagcggtgaatttactttatggaatggaactgcatttaacttc
gaaacaattttacaggcacacgatagtgcagtgagggctatgtcttggtcacggaatgat
acgtggcttataacaggtgacaaccagggttatataaagtactggcaactaaatatgaac
aacgtgaaaatgtatcaggctcataaagatcaagcttgtagatcagtatgttttggtccg
acagattctaaatttgtcacagccagtgatgatggcactgtaagagtgtgggattttgta
cggtgccgcgaagaacatattttaagaggacatggttcagatgtgaagcaggtcgattgg
catcctcaaaaatgtattattgcttctgcaagcaaggatttgcagacaccagtgaaattg
tgggatcctcgttctggacaaagcttggctactattcatgcgcataaaggtacagtgatg
gatgtgaaattcaatcgcaatggcaattggtttctcacagcatcccgtgaccacctcatc
aaattatatgacataagaaatttaaaggaagaaaaacagatatttcgaggccacaaaaaa
gaggctttctctgttgcatggcatcctatccatgaagacatgtttgcaagtggagggtca
gaaggcagcataatgtattggcaagttggggaagacaaagaaattggtggcttggagggt
gctcatgacagcttgatttggagtttagcttggcatccgctgggccatatattagtgtct
ggttctaatgaccacagcacaaaattttggactcgaaaccgtccgggtgaccaaatgaaa
gacagatacaccctattggatgattctaatgctacatccaaaacaacgccttccagttct
tcgaatgataaatctacagaagtaaccagcattccaggaatgggtgataccgatgctgct
gctgctgaaattgcaaagagagatgcagaaaggacaaaaagtggaattcctggtctggac
tggtcgtttgaagagaaaaatgagtttgatcgcaagattattgcggctcaaaacgataac
cgaaagaaaatcccatacactcgtcccgtaccacgatcatttgctgccgcatgggaatcc
aataaagaaggagctcctcgaagatcaagatcaccatctcctaatcgatacgaggaacaa
tatggatggcgtagaaacgatcgtccaccaccaagaatacatagacctcatttaagagga
gaaatgaggtcatccgaggattatattccaatggagcgcggtatggaggagtttgttgag
gttagaaggcctttacttgaacatccaccagatccagagggacgattacctccagcagat
tatccaccgccatcaggtccccccaggcgtccatctttaaatgatcagcctcgtaatata
gattatgaacaggatccaagagaacaaagtcaagactattatcctgaagataaaagttat
catgaaccaaggccaatgccgccgcatcctgataacggtatttataacgaacaaaaccac
attgttggtgaatatcccaatcagcaggaatacgaggagtttggtggtccaattgaaaac
aatgtaaatttccataacgaagatcgtggactgaggccatcccgtggcagatatggtcct
ccaagaggaaggggcagagtgtttccgagggaaagcatgccagaaagagtagactggcac
gaaagcgggaatgaagatcaacaattttcacaggactacctgcctggcaatcaagatgga
tattgtcaaacggataataattacattggtagagaacatggcgcagggggaacatacaat
ctcattgaacaggaagaactggcatataataaattggaaatgcaacttaaacatggtgga
ccattactaggtcgtggaatgaaccacccacggagacccttcaggggacatggcccccct
cgtgtgcggggcaggggcactggtcgtggggcaccaagatatctattggaacatgacggt
gctccaagagggcggcctccaaatcgcatgaggcgaggcatgagaagacctatgtttcag
taa
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