KEGG   Clavelina lepadiformis (light-bulb sea squirt): 143450221
Entry
143450221         CDS       T11416                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
clep  Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04140  Autophagy - animal
clep04142  Lysosome biogenesis
clep04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:clep00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    143450221
   04140 Autophagy - animal
    143450221
   04148 Efferocytosis
    143450221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:clep04131]
    143450221
Membrane trafficking [BR:clep04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    143450221
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 Clathrin WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_THOC3 Beta-prop_EML_2 WD40_Prp19 WD40 Beta-prop_HPS5 Beta-prop_WDR3_1st TPR_7 Beta-prop_IFT122_1st zf-C3H2C3 Beta-prop_VPS8 zf_RING_Vps8_fungal TPR_19 Beta-prop_WDR5 Vps39_1 WDR55 TPR_YpiA zf_RING_Vps8 Beta-prop_WDR36-Utp21_2nd WDR90_beta-prop_4th Beta-prop_WDR3_2nd TPR_HPS5_insect zf-RING_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 143450221
NCBI-ProteinID: XP_076806786
LinkDB
Position
3:complement(2454594..2463046)
AA seq 845 aa
MSSTTSSDDESGDVLEEPQLKYERMGSDLLEILKTDAASCVALHCKFVALGTHWGKMHIL
DHQGNNITSKRFSPHTTTVTSIALDDTGEYVASCSDDGLVSVISLYNDDYSQVITLDKPA
KSVALEPGYAQSSSKQIVFGTDKLVMCVRTWLRRHQQTVLHQGEGLVRTIKWRKQFIAWA
NDWGVKIYDTKQERRITHISRTSTNKRNNTVRPELYPAHISWKDDKTILIGWGNDIKVCA
VREKTTQNLREPTKYCVILYQFKADFACCGIAPLGDQIIALAFLEEDLQNETADDHNEPS
QRPQLRIIEPDPNNKESYIEVSRDALSIRGYQNYRCSDYSLEYNGSEIFVVSPKDVVLAQ
KRDEDDRITWLLQINQHREALELVQQYGKRLKKHTYLEVGLTYLSHLMDDGDFAEAAEIC
PQVLGNNMNLWEQIVYRFSEVGQLREISPLLPRGDFRLPLSCYEMVLEDFLKQDHKGFSK
LLNEWPSELYNITTMTNRVLSYLDRDAHNPILLAALAKLYTADNRFDRALSIYLRLQDPE
AFQLIRKHNLYKALQENILPLMQFREQQQEAVDLLLDNMEYVPVDRVVAELEEKKNHLHK
YLHALFLRDPHLGSEYHALQVRLYAEFDRSRLLPFLRSSNYIPLEEALCICEEREYVDEQ
VFLLGRMGNASRALALITEHETDVSRAVEFCKDQDDSQLWDELINNSLDKPDYIRGLLEN
IGTHVDPIILIKKIPNNMKIPGLRDALVKILQDYSMQTALWWECKRILSSDVVALMRKQM
NVNMRPQRIDESRDCDACGQPLLCKRAGTRLDFPVVVSFLCQHSFHDKCLSSRDCCVCKG
KMRHS
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgtcttcaaccacttccagtgacgacgagtccggggacgtgttggaagaaccccaactc
aagtacgagagaatgggaagtgatttgcttgaaattcttaagactgatgctgcttcgtgt
gttgctctccactgcaagtttgttgctttgggcacacactggggcaaaatgcatattctt
gaccatcagggaaacaacatcaccagcaaacgattctctccgcatactacaactgtgaca
agtatagcgcttgatgacactggagaatacgtagcgagttgctcagatgatggcttggtg
tcagttatcagcctttacaatgacgattatagccaagttatcaccctggataaaccagcc
aagtcagttgcccttgaacctggatacgctcaaagttcatcgaagcaaattgtattcgga
actgataagttggtgatgtgtgtacggacgtggttacgacgtcaccaacaaactgtcctt
catcaaggcgaaggacttgtccgaaccatcaagtggagaaaacagttcatagcttgggcc
aatgattggggtgtaaaaatttatgatacgaaacaagaaagacgaatcactcacatttct
cgcacatcaaccaacaaacggaacaacactgtgagaccggaactttatcccgctcatatt
tcgtggaaggatgataaaacgatcttgattggttggggaaatgatatcaaggtttgcgct
gttcgtgaaaagaccacccaaaatctgcgagaaccaacaaaatactgcgttatactgtac
caattcaaagccgattttgcctgctgtggaattgctccactcggtgatcagattatcgca
ttagcatttcttgaagaagatttgcaaaatgaaacagctgatgatcacaatgaaccttca
caacgtccgcagcttcgaatcattgaaccagatccgaataacaaggaatcttacattgaa
gtttcgcgagacgcgctgtctattcggggttatcaaaactaccgttgtagcgactacagt
ctcgaatacaacggatcggagatatttgttgtgtcgccaaaggatgttgttcttgcacag
aagcgcgatgaagatgatcggattacctggctcctgcagataaaccaacaccgggaagcg
ctagaattggttcagcagtacggaaagcgtttaaagaaacacacatacctggaagttggt
cttacctatttatcacacttaatggatgacggcgatttcgctgaagctgccgaaatttgc
cctcaagtgcttggcaataatatgaatttatgggaacaaatcgtttacaggttttcagaa
gttggtcagcttagggagatttcaccattattacctcggggtgacttcagattgcctttg
tcatgctatgaaatggttcttgaagactttttaaagcaagaccacaagggcttttcgaaa
ttgcttaacgaatggccgagtgagctgtacaacatcaccaccatgaccaaccgagttttg
tcatatttggacagagatgcccataatccaattctgctggcagccttagctaaattgtac
acagccgataacagattcgatcgtgctctcagcatttatttaaggcttcaggatcctgag
gcatttcaactgataagaaaacacaacctctacaaagctttacaggagaatatccttccc
ctcatgcaatttagagaacagcagcaggaggcagttgatttattactcgataacatggaa
tacgttcctgttgatagagttgttgccgaactggaggaaaaaaagaatcatcttcacaag
tacctgcatgctctttttttacgagacccccaccttggcagcgagtaccacgccctccaa
gtgagattgtatgcagagtttgacagaagtcgtttattgccttttcttagatcaagcaac
tacatcccattagaagaagcactttgtatttgtgaggaaagggaatatgttgatgaacag
gtttttcttcttggtcgaatgggcaacgcatctcgggcactggcgttgatcacggaacac
gaaactgatgtttcccgagccgtggaattttgtaaggaccaggacgactcacagctttgg
gatgaactgatcaataattctctcgataaaccagattatatccgtggattgcttgaaaac
atcggtacccatgtcgatccgattatactcatcaagaagattccaaacaacatgaagatc
ccgggactgcgcgacgctctcgtgaaaatcctccaggattactcgatgcaaactgccctc
tggtgggagtgcaagaggattttatcatctgacgtggtggcgctcatgcgcaagcagatg
aatgtgaacatgcggcctcaacgtattgatgagagcagggattgcgacgcttgtggacaa
ccacttctgtgtaaaagagctggtacgagattggattttcctgtggtggtcagctttcta
tgtcaacattcttttcatgataaatgtttgtcatccagggactgctgcgtgtgcaaagga
aagatgcgtcattcttga

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