Clavelina lepadiformis (light-bulb sea squirt): 143450762
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Entry
143450762 CDS
T11416
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03015
mRNA surveillance pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143450762
09123 Folding, sorting and degradation
03018 RNA degradation
143450762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143450762
03041 Spliceosome [BR:
clep03041
]
143450762
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143450762
mRNA cycle factors
Stress granule specific factors
143450762
Spliceosome [BR:
clep03041
]
Complex C
Other components
Complex C specific factors
143450762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
RRM_occluded
RRM_3
RRM_Nup35
ApbA_C
Globin
Motif
Other DBs
NCBI-GeneID:
143450762
NCBI-ProteinID:
XP_076807555
LinkDB
All DBs
Position
1:complement(8462703..8468171)
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AA seq
647 aa
AA seq
DB search
MNSSNTSNYPMASLYVGDLHPDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNF
QQPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTF
SAFGNILSCKVSCNEHGSKGYGFVHFETEEAAVRAIEKVNGMLLNDKKVFVGKFLTRSER
MKKLGERVRQFTNIYIKNFGDKLDEETLKEMFEQHGIVKSVAVMKDRDGNSRGFGFVALE
KHEDAQKAVEALNGKEIEGSSDLLYVGRAQKKQERQAELHGQFEQQKQERIQRFQGVNLY
VKNLDDNVTDDDLREAFSQYGTITSAKIMSEGERSRGFGFVCFSSPEEATKAVTEMNGRI
VGSKPLYVALAQRREDRKAHLTAQYMQRMTTNMGVRIAAPSQMIGQSFQAAGAPGGYFMP
FQGAQRTYMPSQLVRATPRWQQSQPQFQMGDMRNVGPRGPAGPAIRPMTTPVAARGIHPS
PHQMMAQHQVATMQPFKYTQSVRNPAMTGYPQPGQPQQQQPSDPSIQQAVHVQGQEPLTA
SMLAAAQPQEQKQMLGERLYPLIESSHPDLASKITGMLLEIDNSELLHMLESRESLKAKV
EEAVAVLQAHQAKVVAASRQTRQTGPPPQGASVEVAAVPVVVGGNQE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgaacagctctaacacctccaactacccaatggcatctttgtatgtcggtgatcttcac
cctgatgtcactgaagcgatgttgtatgagaagttctctcaggctggtccagtcctctct
attcgggtttgtcgtgatgtaataacccgaagatcgcttggttatgcttacgtgaacttt
caacaaccggctgatgctgagcgtgcccttgataccatgaattatgacccaattaagggt
cgtcccattcgcatcatgtggagccaacgtgacccatctcttcgtaaatctggtgtggga
aacattttcatcaagaacttggacaaatccattgacaataaggctctgtttgatactttc
tctgcatttggaaacattctttcctgcaaggtctcttgcaatgagcatggatcaaagggt
tacggatttgtccattttgagactgaagaagctgctgtgagagcaatagagaaggtgaat
ggaatgttgcttaatgataaaaaagtgtttgtcggcaaatttttgacaagatctgaaaga
atgaagaaacttggagagagagttcgtcagttcacgaatatttacatcaagaattttggt
gacaagcttgatgaggagaccctcaaagaaatgtttgaacaacacggaatagtcaagagt
gttgctgttatgaaagatcgtgatggtaattctcgtggttttggttttgttgctcttgag
aaacacgaagatgcacaaaaagctgtcgaggctctcaatggaaaagaaattgagggatcc
agtgacctattatatgttggtcgtgctcaaaagaagcaggagcgacaagctgaacttcat
ggccagttcgagcaacaaaaacaagagcgtatacaaagatttcaaggtgtcaacctctat
gtgaaaaatcttgatgacaacgtcactgacgatgatctgcgtgaagcattttcacaatac
ggcaccattacaagtgctaagattatgtcagagggtgagaggtcgcgcgggtttggtttt
gtctgcttcagttcacctgaagaggcaacgaaagcagttacagagatgaatggaagaata
gtgggttcaaaaccactctatgttgccttggctcaacgtagagaagatcgtaaggcacat
ctcactgcacagtacatgcagcgcatgacaacaaacatgggtgttaggatcgctgctccg
agtcaaatgattggtcagtcattccaggcagcaggagctcctggtggatatttcatgccc
ttccaaggagcccagaggacatacatgccttcgcagcttgtgcgagcaacacctaggtgg
cagcaaagtcagccgcaatttcagatgggagacatgcgaaatgttggacccagaggtcct
gcaggtccagccattcgacctatgacaactccagttgctgcgagaggaatccatccgtcc
ccccatcagatgatggcccaacatcaagtggcaacaatgcagccgttcaagtacactcag
agcgtgcgcaatccagccatgaccggttatccccaaccaggtcaaccccagcaacagcag
ccatccgacccaagcatacagcaggctgtccacgtgcaaggacaagaaccacttactgct
agtatgctggctgcagctcaaccacaagaacaaaagcagatgctgggcgagcgcttgtac
cctctcatcgaatcatcacaccctgacttggcatcgaagatcactgggatgcttcttgaa
attgataactcggaattgcttcacatgttggaatcccgagaatcgcttaaagcaaaagta
gaagaggctgtggctgttctgcaagcacaccaggccaaggttgtggcagcatctcgccag
acacgccaaacaggtccaccgccacaaggcgccagtgtcgaagttgctgctgttccagtt
gtggttggtggcaaccaggaataa
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