KEGG   Clavelina lepadiformis (light-bulb sea squirt): 143451355
Entry
143451355         CDS       T11416                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
clep  Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03030  DNA replication
clep03410  Base excision repair
clep03420  Nucleotide excision repair
clep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:clep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    143451355
   03410 Base excision repair
    143451355
   03420 Nucleotide excision repair
    143451355
   03430 Mismatch repair
    143451355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clep03032]
    143451355
   03400 DNA repair and recombination proteins [BR:clep03400]
    143451355
Enzymes [BR:clep01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     143451355
    6.5.1.6  DNA ligase (ATP or NAD+)
     143451355
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     143451355
DNA replication proteins [BR:clep03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    143451355
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     143451355
DNA repair and recombination proteins [BR:clep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     143451355
   NER (nucleotide excision repair)
    Other NER factors
     143451355
   MMR (mismatch excision repair)
    Other MMR factors
     143451355
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 143451355
NCBI-ProteinID: XP_076807953
LinkDB
Position
4:complement(9179797..9188318)
AA seq 1013 aa
MLVVANPIRRICIKNILNQQAYKIFGAASRWHLVEGLTPCKLVSGTLNVLSHINFKSNFL
TVEKTMPQKSIMSFFSSKASQKARSPEAKLKEITKKEISKSNENVKAPASDLLTSQDEDS
PLKTKKRKARAVISDSSGDENNDNTESSVKNSSSVYQQSGTLTPIGKLDVNVKKEKNVTE
NTDSTSDSNPPRNVAITPNGTVKRKTARKSAPTPKRLKLEKSDQPSNPKNDVPSENMDEV
NAGNNKNKDALWKETREETAEQSDQSKNEEDAPPEKNEDSDSPSNTPLKKTPKKEAFSCN
GNSKSMSPKKVSDKKPLKKAQSTKKSPSKSKMSNFFQSSRKEVDKDSDEDEKMTKVSAEN
YDPGRKNYHPIKHACWKHKQKVPYLALARTFSLIEDTSGRLRTIEILSNFLRSVIALSPD
ELVTCVYLSLNKLAPAYEGIELGIGEHLLVKAVAEATGRSLAKIKGDVGSTGDLGIVAEN
SRCNQKMMFTPAALTVNAVFKKLRQIASIVGGSSMNQKVALVKSLLVACKRCEARYLVRS
LSGKLRIGLAEQSVLVALANASFLTPPGQDYPPQITNSGSDMAADTLKSKMEEKALIIKT
TYCELPNYDIIIKNLLDHGIDELPEHCKLTPGIPLKPMLAHPTKGVSEVLNRFEKNAFTC
EFKYDGERAQIHVLENGQVNIYSRNQENNTSKYPDIIHRIPGMLKESVKSCVIDSEAVAW
DQEKKQILPFQVLSTRKRKDADISNIKVQVCIYAFDLLYLNGKSLVREPLRRRRELLHDN
FNECVGQCVFAKSQDTTDTDEIAEFLEESVKGNCEGLMVKMLDKDATYEIAKRSHNWLKL
KKDYLEGMGDTLDLVVIGGYKGKGKRVGNYGGFLLACYDEESEEYQSICKIGTGFSDQDL
AKHTQFFKNHLMTEPKSYYRLNGSEADEWFEPVQVWEIKAADLSVSPVYAAANGIVDPEK
GISLRFPRFIRIRDDKKPEQATNSEQVAGMYNKQGQIQNQLKDKDSSKDVDFY
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgttggtggtagcaaatcccataagacgaatttgcatcaaaaatattttaaatcagcaa
gcatacaaaatatttggggccgccagtaggtggcatctggttgaaggtttaactccatgc
aaattagtatctggaacgctgaatgttttaagtcacattaatttcaaatcaaacttcttg
acagttgaaaaaacgatgccacaaaaatccatcatgtcatttttctcaagcaaggcttct
cagaaggccagatcgcctgaagccaaattaaaagagataacaaaaaaagaaattagcaaa
tcaaatgaaaatgtaaaggcacctgccagcgatttacttacgtctcaagatgaagactcc
ccactgaagacaaagaaaagaaaagcaagagcagttatttctgattcctctggagatgag
aataatgacaacacagaaagcagtgtcaagaacagcagcagtgtttatcaacagagcgga
actctaacgccgataggaaaactcgatgtgaatgtaaaaaaggaaaaaaatgtaacagaa
aacactgattccacttcagattcaaaccctccccgtaatgttgcaattactcccaacgga
actgtcaaacgaaaaacagctcgcaaaagtgcacctacaccaaaaaggcttaaacttgaa
aaatctgatcaaccatcaaatcccaaaaatgatgtaccaagtgagaatatggatgaagta
aatgcagggaataataaaaataaagatgccttgtggaaggagacaagagaagagactgct
gagcagtcagatcagagtaaaaatgaagaagatgctccaccagagaagaatgaggatagt
gattcacctagcaacactccgctaaagaaaactccaaaaaaggaagctttttcctgtaat
ggaaattcaaaatcaatgtcaccaaagaaagtttcagacaagaaaccattaaagaaggca
caatccaccaaaaaatccccttcaaaatctaaaatgagcaactttttccaatcttccagg
aaagaggttgacaaagattctgatgaggacgaaaaaatgacaaaagttagtgcggaaaac
tatgatcctggtcgaaagaattatcacccaatcaagcatgcttgctggaagcacaagcaa
aaggtgccttatctggccttagcaagaacgtttagtcttattgaagacacttctggaagg
ttacgcacaattgaaattctgagcaattttcttcgaagcgtgattgctttatctccagat
gaattggttacctgtgtttatctcagtttaaacaaattggccccagcctatgaaggaata
gaacttgggattggggaacatcttctcgtgaaggccgtggctgaagctactggtcgcagc
ttggctaaaatcaaaggagacgtgggaagtactggagatctgggtatagttgcagagaat
agtcgatgcaatcagaagatgatgttcaccccagcagcactgactgtgaatgccgtgttt
aagaaactaaggcaaatcgcatccatcgttggtggctcgtccatgaaccaaaaggttgct
ttggtgaaaagtttgcttgttgcctgcaaacgttgcgaagcaagataccttgtcaggtct
ctgagtggcaagctaaggataggattggctgaacagtcggtcctggttgctcttgctaat
gcgtctttcttaactccaccaggacaagattatcctcctcaaataacaaattctggtagc
gacatggcagctgatacattaaagtcaaaaatggaagaaaaagctctcattatcaaaacc
acatactgcgagttgcccaattatgacatcataatcaaaaaccttctcgaccatggaata
gatgaattgccggaacattgtaaattgactccaggaataccactcaaacccatgctcgct
caccccaccaagggagtgtcagaagttctgaatcgatttgagaaaaatgccttcacctgt
gaatttaaatatgatggggaaagggcacaaatccatgtccttgaaaatggccaggtgaac
atatacagcagaaaccaagaaaacaacacctcaaaatatccagatattatccaccggata
cctggaatgctcaaggaatcggtgaaatcctgcgttattgactcagaagctgtagcttgg
gaccaagagaaaaaacaaatccttccttttcaggtattaagtaccaggaaacgaaaagat
gctgatatatcaaatatcaaagtacaagtctgcatttatgcttttgatttgctttatctt
aatggaaagtcattagtgcgcgagccattgcgcaggaggcgagagttactgcatgacaat
ttcaatgaatgtgttggacaatgtgtattcgccaaatcacaagacaccactgacactgat
gaaattgcagagtttttggaggaatctgtgaaaggcaactgcgaaggtttaatggtgaag
atgttggacaaggatgctacgtatgaaattgccaagagatcccacaattggctcaaactt
aagaaggattacctggaaggaatgggcgacacactggatcttgtggtcatcggtggatac
aaaggaaaggggaaacgagtcggcaattatggaggatttcttttagcttgttatgatgag
gaaagtgaagaatatcagtcaatatgcaagattggaacagggttttctgaccaagatctg
gccaagcatacacagttttttaaaaatcatctcatgaccgagccaaagtcttattacaga
ttaaatggaagtgaggcagatgaatggtttgaacctgtccaagtttgggaaataaaagct
gcagacttgtctgtctctccagtctatgctgctgccaatggaattgttgacccagaaaag
ggaatttctctcagatttccacgatttataaggataagggatgataagaaacctgagcaa
gctacaaacagtgaacaggtggctggaatgtacaacaagcaagggcagattcaaaatcag
cttaaagacaaggatagcagcaaggacgtagatttttattga

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