KEGG   Clavelina lepadiformis (light-bulb sea squirt): 143451516
Entry
143451516         CDS       T11416                                 
Name
(RefSeq) E3 ubiquitin-protein ligase rfwd3.L-like
  KO
K15691  E3 ubiquitin-protein ligase RFWD3 [EC:2.3.2.27]
Organism
clep  Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:clep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:clep04121]
    143451516
Enzymes [BR:clep01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     143451516
Ubiquitin system [BR:clep04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    143451516
SSDB
Motif
Pfam: WD40_RFWD3 Beta-prop_THOC3 WD40 WDR55 Beta-prop_RIG_2nd zf-RING_2 zf-RING_UBOX Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_1st zf-C3HC4 EIF3I Beta-prop_WDR5 ZapB Beta-prop_SPT8 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_1st WD40_like AAA_15 WD40_Prp19 zf-RING_11 Beta-prop_WDR36-Utp21_2nd zf-C3HC4_2 zf-rbx1 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 zf-Nse
Other DBs
NCBI-GeneID: 143451516
NCBI-ProteinID: XP_076808249
LinkDB
Position
4:20641227..20649100
AA seq 844 aa
MTAESSLYVISSDEEDLFAPTAPQASHSEVQPVGGIYSFTSRENAIQNDHVSGDDLHPVS
NVSQPTETTYSAQTQNIQNSSMHSGDVIDEEESDIVLRRRAPRRQSSAQLYLNQSQVSPR
RSQEDVQNSLVVHQNLDNVVTGSSSDRTLLDVAGGLPYCVNREIVNSSAQDNITRATHRN
RISNSLVEIAVRHPTPNSNELDDFFQERPSTPMPTSYLPLPLDHGSVNSNHNSSSTTWQA
AGNNEDVAPTSSSHSPVNEETNHTSQHENATGEGDDNWSATRPPPAIISPLLGGSTQDDF
INRPGGVVALHGKRKLSSLELLSPKRSAKELSQNDEDEGLCCPICFEPWTACGNHRLTSL
KCGHLFGQKCIEKWIKECFPKCPQCNAKAKKSDIRMLFAKKLCAINNVDLEQARKACAKE
QSARHACEQELGQVKMKYHMAVEECQRLKATISELNELVSSKKNNQSNLQHKAKLTLSGD
SSSFSTFESMSSIVMSTGGCRVMDFDPKTQQFAISQPSPHSSFMNGFGIKRLSAADFKSA
CSIVLHQKPIRDLKFSHLTANHLLSASLDGSLRITDLACNTKVHEYKVDKSVWSCCWDRN
ERHVIYAGLSNGSLMQYDLRNTSQALSSIENTMSKCPIVSLYHVPPTATESFQARGGLFT
GTLEGASFWQDQGSHNGSGSTLIADFKPTLLPLEPGSCAGVQYCHETQHCLVTYRPGRCY
RSTTHILCDLQCKKMGADVPQMTCNVIDTYQSGCHHTMLVRNSLHVLPKDNMSSSKNRTL
LSCVCDEARQEVDIYDSNRSKIAQSLNSTGGPPLAVLPVHMDSCPPMLAVLSESRLNLFK
LRVV
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgacagcagagtcttctttatatgtaatcagcagcgacgaagaggatctatttgcaccc
actgcaccacaagcatctcacagtgaagtacagccagttggtggcatctatagttttaca
tctcgagaaaatgctattcaaaatgatcatgtcagcggtgatgatttgcacccagtgtca
aacgtctcccaacccactgaaactacgtacagtgctcaaactcaaaatatacagaatagc
tcaatgcattctggggatgttattgatgaagaagagtcagacatagttttaaggagaaga
gcgccccgtagacaatcttctgctcaactctatttaaaccagagccaagtttcgccaaga
aggagtcaagaggatgttcagaactcacttgtagtccaccaaaatttggacaatgttgtt
actggttcaagttcagatcggaccttattggacgttgctggagggctaccatattgtgtg
aacagagaaattgtaaattcttctgcacaggataacataacaagggctactcatagaaat
cgaatttctaacagcttggtggagattgctgtaagacatccaactccaaattctaacgaa
cttgatgatttttttcaagagcgaccgtccacaccaatgcccacttcatacttacctctc
cctcttgaccatggttctgtgaactcaaaccataacagcagttccactacctggcaagct
gcaggtaacaatgaagatgttgctccaacgtcaagtagtcattccccagtgaatgaagaa
actaatcatacatctcaacatgaaaatgccaccggcgaaggtgatgacaactggtcagca
accagacctcctcctgcaattatttctccacttttgggtggatccactcaagacgacttc
atcaataggcctggtggcgtggtagctcttcatgggaagcgaaagctgtcatcccttgag
ctgttatctccgaaaagatctgctaaggaattatcacaaaatgatgaggatgaaggcttg
tgttgccctatttgttttgaaccatggactgcttgtggcaaccatcgtctaacttcatta
aagtgtggtcatttatttggacagaagtgtatagaaaagtggatcaaagaatgctttcca
aaatgcccccagtgcaatgccaaagctaagaaaagtgatatccgcatgcttttcgccaag
aagctgtgtgccatcaacaacgtcgatttggagcaagcacggaaagcttgtgcaaaggaa
caatcagcgagacatgcatgtgaacaagagcttgggcaagttaaaatgaaataccacatg
gcagtagaggaatgtcaaaggctaaaagccaccatctctgaattgaatgagttagtatca
tcgaagaaaaataatcagagcaaccttcagcataaagcaaaattaactctcagtggtgac
tcgtccagtttcagtacatttgagtcaatgagttcaattgttatgtccactggtggatgc
agagtaatggactttgatccaaagactcaacaatttgcaatttcacaaccgagtccacat
tccagctttatgaacggcttcggtataaagcgattaagtgctgccgactttaagagcgcc
tgctctatcgtacttcaccagaaacccatcagggacttaaaattcagtcatttaacagcc
aaccatcttctttctgcttcccttgatggttcgctacgtatcacagatcttgcatgcaac
acgaaagtccatgaatacaaagttgacaagtctgtatggagctgttgttgggatagaaat
gagaggcatgtcatctatgcaggcctcagcaatggaagtctgatgcagtatgacctcaga
aacacatcacaagcactctcctctatcgaaaatacaatgtcaaagtgccctatagtctcc
ctttaccacgtcccacccaccgcgactgaatcttttcaagcgcgtgggggtttgtttacg
ggaactctcgaaggtgcttcattttggcaagatcaagggtctcacaatggaagtggatct
acactaattgctgattttaagccaacactacttcctctggaaccaggaagctgtgctgga
gttcagtattgccacgagacgcagcattgtctggtcacgtacaggccagggcggtgttac
cgttcaactacccacatcctatgtgacttgcaatgcaagaaaatgggggcagatgtgccc
cagatgacgtgcaatgtcatcgatacttaccaaagtggatgtcatcatacaatgcttgtg
agaaacagcttgcatgttctgccgaaggacaatatgtcatcgtctaagaacaggaccctt
ttaagctgtgtatgcgatgaggcaagacaagaagtggatatttacgactctaatcgaagc
aaaattgcccaatcactgaacagcaccggaggaccaccattagctgtgttgcctgtgcac
atggactcttgcccgcctatgcttgccgtactgtctgaaagcagattgaacttgttcaaa
ctacgagttgtttaa

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