Clavelina lepadiformis (light-bulb sea squirt): 143452128
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Entry
143452128 CDS
T11416
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
143452128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clep03021
]
143452128
03036 Chromosome and associated proteins [BR:
clep03036
]
143452128
Transcription machinery [BR:
clep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
143452128
Coactivators
SAGA/TFTC/STAGA complex
143452128
Chromosome and associated proteins [BR:
clep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
143452128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
143452128
NCBI-ProteinID:
XP_076809103
LinkDB
All DBs
Position
4:complement(10830860..10839440)
Genome browser
AA seq
670 aa
AA seq
DB search
MIFVTIDVFQGIKIFSLFFKVWKMTTINGLSNSTSSYVTLNSAHVNNVSSTALSNKQTPT
MTTAATKYIQLQSVRPTIANSVATTHATSVVSPAAPQVMNNAVTLPTSSQTPRNPLATNI
NIPPGMVLTRTSSGQLVLVNGHHTANNTQQPMVTPATRIVTTIAMATNSTLVTTVGKTVS
VVAPMNAVSKSEVKVPLTTTNPVNLSQDDMVNVNKCRNFLTTLIKLASTGGQPQETVRNV
KTLVQNLIDDKIAPEDFTKQLQTELKSSPQPYLVPFLKKSLPLLRLTMMQQSQVSAVPPA
AVVQAANRITSLQFDANKAPASPKPKTVPKVTKPFNKFVRTNVPDIRLPRVSSVGPALKH
PSLQTPPPDGPQLQFHAPHPSAVSGAQSSSLTTIKPFTVNPLRGAQKWGATSAIGGGAYK
EDDDINDVASMAGVNLLEESARILATNSDLVGTQTRSCEDDSVLNRAVLQKRMSEIASKN
PQIQHIHADAIKFLSCAAESRIKDILHKLSGVVCHRMVNFKEEEHYKACGDVKTQLKFLQ
ELDQIEKKKHDEAERDILMRAMKSRSKNDNPEQMRLKERAKEMQQQELEKMQIRNADETA
RNAIGPRKKRARIDSPMSTTSGLIENHMGTTSRNPTRSRTKRVNLRDLIFVMENEKETCK
STHLYKSYLK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgatttttgtcactatagatgttttccaggggataaagattttttcactattctttaag
gtttggaaaatgactacaatcaatggattaagtaattcaacttcaagttatgtaacttta
aattctgctcatgtaaacaatgtctcaagtactgctttatccaacaaacaaactccaacc
atgacaaccgctgcaacaaagtatatccagttacaatctgttcgaccaactatcgctaac
tcagtagcgacaacccatgctacttctgttgtcagccctgcagctcctcaagttatgaat
aatgccgtcacattgccaacaagctcacaaaccccaagaaatccattggccactaatatt
aacattccaccaggaatggtgcttaccagaacttcaagtggtcagcttgtgttagtaaat
ggacatcacacagcaaataacacacagcagccaatggtcacgccagccacaagaatagtt
accactattgctatggcaactaactccactctagtaacaactgttggcaaaactgtttct
gttgtagctccgatgaatgctgtttcaaagtcagaagtaaaagttcccttgacaaccact
aatcctgtgaatttgtcacaagatgacatggtaaatgtcaataagtgtcggaacttttta
accacccttatcaaactagcttccactggaggacaaccccaggaaaccgttcgcaatgtc
aagacattggttcaaaatctgattgatgataaaattgctccagaagatttcacaaagcaa
ttgcaaactgagttaaagtcttcaccacagccatatttagttccgtttttgaagaaaagt
ttgcctttgctgaggcttactatgatgcaacaaagccaagtaagtgcagttcctcctgct
gctgttgtacaggcggccaatcgtattacatcattgcaatttgatgccaacaaagctcca
gcatcaccaaagcccaaaactgtaccaaaagtcacaaaaccgttcaataaatttgtcaga
acaaatgttcctgacatccgtcttcctagagtgagctcagtggggccagcactgaaacat
ccttcacttcaaacccctccccctgatggtccccaacttcagttccatgctccgcaccca
tctgctgtgtcaggagctcaatcttcttcacttacaaccataaagccattcactgtaaac
cccttaagaggagctcaaaaatggggtgctacttcagcaattggaggaggcgcctacaaa
gaggacgacgacattaatgatgttgcttctatggctggtgtaaatctcctagaagaaagt
gcacgaattcttgctacaaattcagatcttgttggcacacagactcggtcctgtgaagat
gacagtgtacttaatcgcgctgttcttcagaaaagaatgtctgaaatagcatccaaaaat
ccgcagattcaacatatacatgcagacgcaattaagtttctttcatgtgcagctgagtcc
agaataaaagacattctccataaattatctggagttgtttgccacaggatggtcaatttt
aaggaggaagaacactataaagcatgtggggatgtaaaaacacagctaaaatttttacaa
gagcttgaccagatcgagaagaagaagcacgacgaagctgaacgagatattttaatgagg
gcaatgaagagccgctctaaaaacgataatccagaacaaatgaggttaaaagaaagagca
aaagagatgcagcagcaggaacttgaaaaaatgcagattcgaaacgcggatgaaactgct
cgtaatgccatcggtccacgcaagaaaagggcccggatcgattccccaatgtcgactaca
tcagggttgattgaaaaccacatgggtacaacatctcggaatcctactcgttcaagaact
aaacgtgttaatcttcgtgacctcatatttgttatggaaaacgaaaaagaaacgtgcaag
tcaacccatctttacaagtcttatctcaaataa
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