Clavelina lepadiformis (light-bulb sea squirt): 143452520
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Entry
143452520 CDS
T11416
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143452520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clep03021
]
143452520
03019 Messenger RNA biogenesis [BR:
clep03019
]
143452520
Transcription machinery [BR:
clep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
143452520
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
143452520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_12
zf-CCCH_4
zf-CCHC
zf-CCHC_2
zf-CCCH_2
zf-CCCH_DUS3L
zf-CCCH_RBM22
zf-C3H1
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
143452520
NCBI-ProteinID:
XP_076809639
LinkDB
All DBs
Position
4:5652938..5659462
Genome browser
AA seq
304 aa
AA seq
DB search
MQEVVANLDHVKFELEYAIEQQIGVQPLPFTGMDKSGAPICHFFKLSVCQRGANCPFRHV
VGDKSVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFGRCDNKDCQYQHIDPADK
IKDCPWYDRGFCKHGAMCKHRHRRKIMCMNYLVGFCPEGSKCKFAHPPWELPTIENKGVK
CLVCSEFGHRANACPRHHNKYESNADAMAIGAPSLVKSSPLQVNVSKLVDELFQQRNNRM
QVAGMPRMDTSKPPNVPFKPPVSRDLSHITCFRCGQKGHYASRCLEGGGIFSSLPFRPAS
IGPS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaggtggtggccaatttggatcatgtgaaatttgagttggaatatgcaattgag
cagcaaattggagtacaacctttaccattcactggcatggacaaatcaggtgcgcccatc
tgtcattttttcaagttaagcgtctgccaacgaggagctaactgtccgtttcgtcatgta
gttggagacaagtcagttgtgtgcaagcactggctgcgtggactgtgcaagaaaggggat
cagtgcgagtttcttcacgaatacgacatgagcaagatgccagaatgttatttttacgct
agattcggtcgttgcgacaacaaggattgtcaataccaacacattgaccctgctgataaa
ataaaggactgtccgtggtatgaccgaggcttctgtaagcatggagcaatgtgtaagcat
agacatcgaagaaagatcatgtgtatgaactacctcgttggattttgtcctgaaggttca
aagtgcaaatttgcacaccctccttgggaactaccaactatagaaaacaagggtgtaaag
tgtttggtttgttcagaatttggtcatcgagcaaatgcgtgtccccgccatcataacaaa
tatgaatccaacgcagatgctatggcaatcggcgcaccttcactagtcaagtcatcgcct
ctacaagtgaatgtatccaagttggtagatgaacttttccagcagcggaataatcgcatg
caagtagcgggtatgccgcgcatggacacaagcaaacctccaaacgttccattcaagcct
ccagtttctcgagacctaagccacataacctgcttccgatgcggacagaagggccactac
gcgagcagatgcttggaaggtggcggaatattttcctcgttgccgttccgccccgcttct
atcggaccgtcttaa
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integrated database retrieval system
