Clavelina lepadiformis (light-bulb sea squirt): 143453178
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Entry
143453178 CDS
T11416
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04517
IgSF CAM signaling
clep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
143453178
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
143453178
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clep04812
]
143453178
Cytoskeleton proteins [BR:
clep04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
143453178
Intermediate filaments
Intermediate filament-binding proteins
143453178
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
CAMSAP_CH
SR_desmoplakin_3
DYH2-5-8_CC
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
143453178
NCBI-ProteinID:
XP_076810467
LinkDB
All DBs
Position
4
Genome browser
AA seq
2873 aa
AA seq
DB search
MSVTLTEMEQFNREAVSVSGTRQVLDSEGNIQETTCNLTIEDGYPPLNPILQSVELSSKQ
VIETKSSVRHYQTSTTTVTQQIRSEIASAQRGIETTQQRFITGSHSAGGKLYSTKLLSSG
ELQIDNRSKLNNAPRDSLNNFVSREHTQYSAQTGNKASKSMAELQQSRKFEINAASATTT
MQQAAKEAVENGNDDINYDMEEFVDQRWNMAEYEDEETDLDNSSARLFERQRIKALADER
EEVQKKTFTKWVNSHLVRVSCRIQDLYMDLRDGRMLMKLLEILSGEKLPKPTRGKMRIHC
LENTEKALQFLKSKKVHLENMGSHDIVDGNHRLILGLIWTIILRFQIQDISVETEDSRET
RSAKDALLLWCQMKTAGYANVNVFNFTTSWRDGLAFNAIIHKHRPDLVDYDSLKRSNALH
NLQNAFNVAEQHLGLTKLLDPEDIVVERPDEKSIITYVVTYYHYFSKMKAIAVEGKRIGK
VLDNALESNKMVEKYDTLASDLLEWIEQTIMILNDRTFANSLSGVSAQLAAFNNYRTQEK
PLKFEEKGNLEVLLFTLQSKMRANNQKPFIPKEGKLVSDINKAWELLEKAEHGRELALRN
ELLRQERLEHLASRFDRKAAMRETWLSENQRLVTQDNFGGDLAAVEAATKKHEAIETDVK
AYEERVQAVVAVANELQREDYHDIDRINDRKDNVLQLWEYLLELLRGRRSRLELNVRLQL
MFQEMISLLDWMEDMKGQVEREDLGQHLVSVEDMLQKHSLLEQDIAVHGDRVKAIEDQSL
EFLNPTDEGYSACEPSAVSDRVGGVRDTYDDLCCLAAKRRAKLEESRRMHQFFATMTEEV
AWAREKEQLMMSDDVGRDLTSVHSLVTKQKALEDEMKGRKSALENTVASGEELIKQDHFA
SDDIRSRINSISEQWENLEQLATARRTRLQEAENLYQFYADADDVDNWLVDTYRIVSNDD
CGRDEQSVQALIKKHAQVQEELKDYEAVIKALDDQAAALTERDQESVDVQERLRSINSRY
KELLNFAKQRKEKLIDARSLYKFFSEADTVLAWIDEKEQVLHSMIIPDNIEDMELVQHRF
EGYEKEINKHAPQIAVINQMARQLVMAQHPNTDDVTAKQNNLNTRWAALRELLEERRELL
ASAKGLHGFCLECDETEGWIKDKARLLAGSGGDDQLNNRDLAGVVALQRKLSSMERDLAA
IQAKLDDLRSEAERLSDKHPEEADEIRKKFEQMENVWNELRKMLRQREDSLGAAGNLQKF
LKDLDRFQAWLSATQTAIASEDMPQSLPEAEKLLQQHQAIKLEIDNYQDDYDQIKETGKQ
VTAGREDEPQYMFLGQRLQALDQGWDELGKMWENRNKFLNQALEYQTFIRDCKQAEQLLS
NQEYALDGAKRSAAACTSPDVAEEILKKHESFMATMPGAEERVDVVLDDAKRLGEPEHHA
ADQICERADKVRERQKKNREEAEEVTALLRENLQMQRFLSDCDELSEWINEKMLTAKDAS
YSDARNLHSKWQKHKAFTAELAGNKDRLERLEEEAAQLVEVKPERSEEIEARMEELQRYW
SELEDCTKGKEKTLFDAHKAELFTQSCEELEKFAFQMEQQLDSDDVGKDLASVNALMKDY
IAHEDEIAIRKQEVEELESQMLQPLEGNESECVGPKHIEIKERIENLSKPLENRKAALQA
SKQLHQFFRDVEDEKLWVDEKMPQAASVEHGNSLQTVQTLQKKHQSLTSEIAGHEPIIQE
VCNREVAMATEDISHTDRIIEKCNELQDKWTNLLEEVDARKERLVEAENAQQYYFDANEA
ISWMGEQELYMMSDEKAKDAQGATKMLKKHQAQEQSVDDFADTIQELSKISRNLVDCQHP
ESEQIAACQVQVDHTYAALKDLAEERHLKLRERCDLFRLSREIDDLEQWIAQKEAIATSQ
ETGQDFEHVTMLQEQFNEFKRDTIKTGEERISDANRLSDDLISVGHSDAAEIANWKDTIN
EAWADLLELIETRVQMLAASYSLHKFYYDASETLARIQEKHHQVPDDLGRDYISVEDFQR
KHDIFAQDIKAIGAQVESVTSSRKSLEVSYAGDDLEQIVKKEQAVVDAWNDLLNLVRKRA
ALLSDALNKYRFFNMYRDLMTWMEGTLCQIDLQDKPKDVSGVESAIIVHQGTKADIEARN
DSFEECISLGKQLISTGHYASDEVKEKLDTLTEKRNQVVDRWQEKWDWLNLMLQVYQFAH
DAATCDAWLQQQNFLLNDMAVDSCQSVADVEQLLRRLDGFDKAVIPWESRFTGLEELTDM
EIREEETRKRAQEKMEQEKQEQEENERRDREEEERKQQLRKEAELEAERVQAIVDAEKEA
AEAPVNGELVVNGVVEEESGGAGDEVDFARKKSCEPPTHEGFLQRKQEMDADGKRASHRQ
IKASPTKRRDLDRPKSRNRFNLKQWLNTPSQPQTRTVCETPFVHADDAKVPRRRLFETAE
NLPRTVSTSDTVGGTRIIQNRLNRSLHSLNVLNTTNYHCRTKLPVKNASANRGLVAVALQ
AQIKRSVTSRDDRLSFGKSVVSFLKHSTNPQHQDTDLKTPTLPPPLYIESKVKRITSVQA
QVHRNPVYNNDCFDQICTAKPSSNLFHETPISNAAFENQARFDSMEVLLRSKAHSKRLWM
YEKRRQKAISKLLAEDELHPPLKPVTASAQCSSQQRPRTKSLLNSSSFGNSFHAHLETDR
IRTDYDNSSAFFSPHPSIPRDNDPSTVPSSTCKDSFFVANTNAQNPGSGESMMPFKLGYL
IEKQPSISLSDVDDEVNFYLNETQSPSSLMLHNEDNDVELGLSPSQFTSPGCQLITSTPI
TGIFRTMPPTSTRGKPYSDETSSVALYAASHVQPPPTRLASIFFDWMGAKSMA
NT seq
8622 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttacattgactgaaatggagcagttcaaccgtgaagctgttagtgtatctggg
acacggcaggtactggatagcgaaggtaatattcaggaaacaacatgcaatttaacaatt
gaagacggttatccccccttaaatcccattttgcagtcggttgaactttcaagcaagcaa
gtcattgaaacgaaatcttctgttcgtcattatcaaacgtccacaacaacagttactcag
caaattcgttctgaaatagcaagtgctcagcggggaattgaaactacccagcaaaggttt
atcaccggatctcattctgctggaggaaaactttactctactaaactgttatcaagtgga
gaattgcaaatcgataatcgatcgaagcttaacaacgcaccccgtgattcgttaaataat
ttcgtatccagagaacatacccaatattcggctcagactggaaacaaggcttcgaagagc
atggctgaattacagcaaagtagaaagtttgaaataaatgctgcatctgcaacgactacg
atgcaacaagcggccaaggaagccgttgaaaacggaaatgacgacatcaactacgatatg
gaggagtttgttgatcagcggtggaatatggcggaatatgaagacgaagaaactgatttg
gacaacagctctgcacgtctgtttgaaagacaaaggattaaagccctggccgatgagcgt
gaggaagtacaaaagaaaacttttaccaaatgggttaactcccaccttgttcgtgtatct
tgtcgcattcaggacctctacatggatcttcgagatggaaggatgctgatgaaattgctg
gagatcctatcaggggaaaagcttccaaagcctactagaggaaagatgaggattcattgt
cttgaaaatactgaaaaagctcttcagttcttgaaaagtaaaaaagtccacctggaaaat
atggggtcgcatgatatagtggatggaaaccatcgcctcatacttggtctcatttggaca
ataattttaagatttcagattcaagatatcagtgtcgaaactgaagatagtcgtgagacg
cgttcagcaaaagatgcacttttgctctggtgccagatgaaaacagctggatatgctaat
gttaatgtcttcaatttcacaaccagctggcgcgatggactggccttcaatgccattatt
cataagcacagacctgatttggttgattatgactcactgaaaagatcaaatgcacttcat
aaccttcagaatgcattcaacgttgcagaacagcatcttggattaactaaacttttagat
cctgaagatattgttgttgagcgtccagatgagaaatccattattacatacgtggtaact
tattatcattacttctccaagatgaaagctattgctgttgaaggaaaaagaatcgggaag
gttctcgacaatgcattagaaagcaacaagatggtggaaaagtatgacacacttgcctct
gatctcttggaatggattgaacaaaccatcatgattttaaatgatcgcacgtttgctaat
tcactttcaggtgtcagtgcccaattggcagcatttaacaactacagaactcaagaaaag
cctctaaaatttgaggaaaagggcaatctggaagtacttcttttcactctgcagagtaaa
atgcgagcaaataaccagaaaccttttatacccaaggaaggaaaacttgtttctgacata
aacaaggcttgggaattacttgagaaagctgagcacggcagagagttggctctgagaaat
gaacttttacgtcaggagcgtctggaacatcttgcaagtcgatttgatcgcaaagctgcc
atgagggaaacttggttgagtgaaaaccaaagattagttactcaggataattttggaggt
gacttggcagctgttgaagccgcaacaaagaaacatgaagcaatagaaactgatgtgaaa
gcttatgaagaacgtgtacaagctgtagttgctgttgctaatgaactacagcgagaagac
taccatgacatagatagaatcaatgatcgcaaagacaatgtgctgcagttgtgggaatat
ctgcttgagttattgcgaggtcgtcgctccaggcttgaacttaatgttcggttgcagttg
atgtttcaggaaatgatttctctactggactggatggaagatatgaagggccaagtagag
cgagaagatctaggacaacacttggtgagtgttgaggacatgctccaaaagcattctttg
cttgaacaagacatagctgtccatggagacagggtaaaggcgatcgaagatcaaagtcta
gaattccttaatccaacggatgaaggttattctgcatgtgaaccatcagctgtcagtgat
cgtgtgggtggggtgcgcgatacttacgatgatttgtgttgtcttgctgcgaaacgtcgt
gccaaactggaagaatctcgccgcatgcaccaattttttgcaaccatgacagaagaagtt
gcttgggcaagagaaaaagaacaactgatgatgtcagatgatgttggacgggatttaacg
agtgttcattctttggttactaagcaaaaggctctagaagatgaaatgaaagggcgaaaa
tcagctcttgaaaacacagttgctagtggagaagagttgatcaaacaagatcattttgca
tctgatgacattcgatctcgcattaactccatcagtgagcagtgggaaaatctggaacaa
cttgccactgcaagaagaacgcgactacaagaagcagaaaatctttaccagttttatgcc
gatgctgatgatgttgataattggctggtcgacacatatcgcattgtgtcaaatgacgac
tgtggaagggatgagcagtccgttcaagcattgatcaaaaagcatgctcaagtacaagaa
gaactaaaagattatgaagcagtcataaaagctttggatgaccaggctgcagctttaact
gagagagaccaagaatctgttgatgtccaagaacgcttacgaagcatcaacagcagatac
aaagagttacttaacttcgcaaaacagcgaaaagagaaactgatagatgcaagatccctt
tacaagttcttcagtgaagcagacactgtgcttgcttggattgatgaaaaagagcaagtc
ctacattccatgattattcctgataatattgaagacatggagttggttcaacatagattt
gaaggttatgagaaagagatcaataagcatgctccacaaattgcagttatcaatcaaatg
gcacgtcagttggttatggcccaacatccaaatactgatgatgtcacagcaaagcaaaac
aatcttaatacaagatgggcagcactgagagaacttttggaagaaaggcgtgaactttta
gcatctgccaaaggcttgcatggtttttgtcttgaatgtgacgagactgaaggatggatt
aaagataaagcccgattacttgctggtagtggtggcgatgatcagctcaataatcgcgat
cttgctggtgttgttgctctccaacgtaaactgtcaagcatggagagagacttggctgcc
attcaggctaaactagacgacttgcgttctgaagctgaacggttatctgataagcatcca
gaagaggcagatgaaatccggaaaaagtttgagcagatggaaaacgtttggaatgagctt
cgaaagatgcttcgtcaaagggaagactcccttggggcagctggcaaccttcaaaagttc
ttgaaagacttagatcgattccaggcttggttatctgcaacgcaaaccgcaattgcatca
gaagatatgccccagtctttaccagaagcagaaaaactcctccaacaacatcaagccatt
aaattagaaatagacaattaccaagatgactatgaccaaataaaagaaacaggaaaacaa
gtaacagccggtcgtgaagatgaacctcagtatatgtttttggggcaaagactgcaagca
ttggatcagggctgggatgagttgggcaagatgtgggaaaatagaaataaatttcttaac
caggcgcttgaatatcagacattcatcagggattgcaaacaggcagagcaattactcagc
aaccaggaatatgcattggatggagctaagagatcagcagctgcatgcacatcaccagat
gttgctgaagaaatattgaagaaacatgagtctttcatggcaaccatgcctggagctgaa
gaaagagttgatgtagttcttgatgatgcaaaacggcttggtgagcctgaacatcatgct
gcagatcagatttgtgaacgagcagataaagttagggaacgacaaaagaagaatagggaa
gaggcagaagaagtcacggctttattacgggaaaacctccaaatgcaaagatttttatct
gattgtgatgaactcagtgagtggatcaacgaaaaaatgttgactgccaaagatgcttca
tacagtgatgcaagaaatcttcattctaagtggcaaaaacacaaggcatttactgctgag
ctagctggaaacaaagatcgacttgaacgcttagaagaggaggctgctcaattggttgag
gtaaagcctgaacgttctgaagagattgaagctcgcatggaggaactacagcgttactgg
tccgaattggaagattgcactaagggcaaggaaaaaactctctttgatgcccataaggct
gagttatttactcagtcctgtgaagaacttgagaaatttgcctttcaaatggaacagcaa
ttggattctgatgatgttggaaaggatcttgcaagtgtcaatgcactcatgaaagattat
attgctcatgaagatgaaattgctattcgcaaacaagaagttgaggagcttgagagtcaa
atgttacaaccactggaaggcaatgagtctgaatgcgttggaccaaaacacattgaaata
aaggaacggatagaaaatttaagcaaaccacttgaaaaccgtaaagcagctttgcaagct
agcaaacagttacatcaattcttcagagatgttgaggatgaaaaactctgggttgatgag
aagatgccccaggccgcatccgttgaacatggaaacagtctgcaaaccgttcaaacttta
caaaagaagcatcagtctcttacaagtgaaattgctggccatgagccaataatccaggag
gtatgcaatagggaggtcgctatggcaactgaggatatttcccacacagatagaatcata
gaaaaatgtaacgaactgcaagacaagtggacaaacttattggaagaggtggacgcgcgc
aaggagagactggttgaagcagaaaacgcacaacaatattactttgatgcaaatgaagca
atttcctggatgggagagcaagaactttacatgatgtctgatgaaaaggccaaagatgca
cagggagctaccaagatgctaaagaaacatcaagcccaggagcagagtgttgatgatttc
gcggacacaattcaagaattgtcgaaaattagcaggaacctagtggactgtcagcatcca
gaaagtgaacaaatagcagcttgccaagtgcaggtcgatcatacttatgccgcactaaaa
gatttagctgaggaacgtcatcttaagttgagagagcgttgcgatctcttccgtttatct
cgtgagattgatgacttggaacagtggattgctcaaaaagaagctattgctacttcgcaa
gaaactggacaagactttgaacatgtcactatgctgcaagaacaattcaatgaatttaaa
cgagacacaataaagacgggagaggagagaatttcagatgctaatcgactctctgatgac
ctgatcagtgtaggacattctgatgccgctgaaattgcaaattggaaagacaccataaat
gaagcctgggctgatctcctcgaactaatagaaaccagggtgcagatgttagctgcttcc
tatagtcttcacaaattttattacgacgcgtcggaaactctggctcgtatccaagagaag
catcaccaagtaccagatgacttaggtcgggattatatttctgttgaagactttcagaga
aaacatgatatctttgcacaagacataaaagccatcggtgctcaagttgaatcagtaaca
tcatctcggaagagtcttgaagtaagctatgcaggcgatgatttggaacaaattgtgaaa
aaagaacaagctgttgttgatgcgtggaacgatcttctcaatcttgttcggaagagagcc
gctctactgtcagacgctctcaacaagtatcgcttcttcaacatgtatcgagatctcatg
acatggatggaaggaacattatgtcagattgatctccaggacaagccaaaagatgtgtcc
ggggtagagtctgccattattgttcatcagggaacaaaggccgatattgaggcgcgaaat
gacagttttgaggagtgcatttcgcttggaaagcaattaatttcaactggtcattatgca
agtgatgaagtgaaagaaaaactagacactctaactgaaaagcgaaaccaagtggttgat
cgctggcaggagaagtgggattggctgaacctgatgctccaggtttatcagtttgctcac
gatgctgccacttgcgatgcttggctccaacaacaaaattttctgcttaatgacatggca
gttgactcttgtcagtcggttgctgatgtagagcagcttcttcgtcgtcttgatggattt
gataaggcagttataccatgggaaagccgttttactggtcttgaagaattgaccgatatg
gaaatccgtgaagaagaaacaaggaaacgtgctcaagagaaaatggagcaagagaaacaa
gagcaggaggagaacgagaggcgggatcgtgaggaggaagaaagaaaacagcagctaaga
aaagaagcagagttagaagcggaaagagtccaggcaattgttgatgctgaaaaggaagcg
gctgaagcaccggtcaatggagagctggtagttaacggagttgtggaagaagaatcagga
ggagctggtgatgaggttgattttgctcgaaaaaagtcttgtgaacctcctacccatgaa
ggattcttgcagcgaaagcaggagatggatgcagatggcaaaagggcatcacacaggcag
attaaagccagtcctacaaagcgtcgtgaccttgacaggccgaaatcgagaaatcggttt
aacctaaaacaatggcttaatacgccgtcgcagcctcagacaaggacagtttgtgaaact
ccattcgttcacgctgacgatgcaaaggtgccaaggcgcagattatttgaaactgcagaa
aatcttccccgaacagtgtctaccagcgacacagtaggcggcacacgaataattcaaaac
aggttgaaccgatcacttcattctttaaatgttctaaacaccaccaactaccattgtcgg
acgaaattaccggtcaaaaatgcatcagccaatcgtggtttggtcgctgttgctcttcag
gcgcaaataaaaaggtcggtaacatcacgcgatgaccgtttatcgttcggaaaatcagtt
gttagttttctcaaacattcaaccaacccccaacaccaagatactgacctaaaaactccg
acattgcccccgccattatacatcgaaagcaaggttaaaaggattacatctgtgcaggct
caagttcaccgtaatcctgtctacaacaacgattgttttgatcaaatttgtaccgctaag
ccttcatcaaacttatttcatgaaacacccatttcaaatgctgcttttgaaaaccaagct
agatttgacagtatggaagtgcttttgcgttccaaggcacattctaaaagattatggatg
tacgaaaagcggcgacagaaagcaatatcgaaattattagctgaagatgaattgcatcca
ccattaaagccggttactgcaagtgcacagtgcagcagccagcagaggcctcgaacaaag
tcgctgcttaattcttcaagtttcggtaattcctttcacgctcacctggaaactgatcgc
atccgaacagattacgacaactcatcggcatttttctcgccacatccaagcattccacgg
gataatgacccatcaactgtgcccagcagcacatgcaaagactcattttttgtagcgaac
actaatgcccaaaatccgggatctggtgaaagtatgatgccatttaagctcggatattta
attgaaaagcagccttctatatcgcttagtgacgttgacgatgaagtgaatttttacctg
aatgaaacgcaatcaccgtctagtttgatgttacacaacgaagataacgatgtcgaactg
ggactatcgccaagtcaatttacttcacctggatgccagttaattacaagcacaccgatt
acaggcatatttcgcacaatgccccctacatcaactcgaggtaaaccctactcagacgaa
acatcttcagtagccctctatgctgcctcgcatgtgcaacctcccccgacaaggttggca
tcaattttcttcgattggatgggcgcaaaaagcatggcgtaa
DBGET
integrated database retrieval system
