Clavelina lepadiformis (light-bulb sea squirt): 143455030
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Entry
143455030 CDS
T11416
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03030
DNA replication
clep03410
Base excision repair
clep03420
Nucleotide excision repair
clep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
143455030
03410 Base excision repair
143455030
03420 Nucleotide excision repair
143455030
03430 Mismatch repair
143455030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clep03032
]
143455030
03400 DNA repair and recombination proteins [BR:
clep03400
]
143455030
DNA replication proteins [BR:
clep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
143455030
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
143455030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
AAA_30
AAA_17
PTCB-BRCT
BRCT_2
Rad17
RNA_helicase
RuvB_N
AAA_14
AAA_5
AAA_33
AAA_19
AAA_16
nSTAND3
AAA_18
TIP49
NTPase_1
AAA_assoc_2
Motif
Other DBs
NCBI-GeneID:
143455030
NCBI-ProteinID:
XP_076811172
LinkDB
All DBs
Position
1:21704364..21710890
Genome browser
AA seq
1008 aa
AA seq
DB search
MDIRKFFSPPSKKKSTEDDFVKKKTKYTSSKKKGVLFDSDTSDEDPIPKQVKQKLNTSDI
IYASDEEKQTHKKSKLKKKADKSIDKPLNKTTPSEFFGSFKPSNKSRVTKRKASDEAPEA
KPKVKKCVEIDLLDELDGHLPKLPNGSKKTESISSKLAKGVASQMDANPKSNGIKAKNSE
PCKTQESVSKKPKKTSPKKVKAESDTSKIKQELNALKCTKIKKDAEIKQASTAESKNTPR
KRVASTEDQSDPTSAKKENFLKYKQWQNRSGPSAPGSKLIPKAADFCLEGKVFVVTGVQE
SLTRDEIRSLIERYGGKVTTSVSSRTSYLITGEDAGESKLKKAEQHKTKVISEDEFLDLL
RTLPGKKSKYEIDNDSSPVKHKTKGATMSRSLSEPSQKAVNTQAKLKKEKSLQSPSSSQE
SSSSLTASQKPTAGDENLKLMWVDKYKPKTTKQIIGQQGASSNMNKLMKWLKNWHANNRT
AEGKKKPKPKINQWGGGDPTGASFKAALLSGPPGVGKTTTATLVCEELGLSFVELNASDT
RSKRTLKEDVGESVQNTSISNLFGSGDHNSAKDGSKHVLIMDEVDGMAGNEDRGGMQELI
QIIKSTKIPIICMCNDRSSQKIRSLANHCFDLRFQRPRAEQITGALMSICYKEGVKVQAP
AVQAIIRGCNQDVRQVLHNLNMIQASKSSLSYDDAKAHADKAQKDQNLGIFDIAKKLLTS
ESGSLSLLDKSNLFFMDYSMVPKFIQENYPHVTPYAAKGNLHKHLQLLSKTADSIAFGDL
IETSMRHDQSWNMLPTLGLVSSVVPSDLMRGGMHGMLNFPSFFGKLSTTGKNHRLLQDLK
FHASLSTNGCTEETFNLDLIPYMRWHLTEPLLKQSKGGDNEIHRVTKLLNDYDLIKDDFD
NIVEIGQYQGKPNLMSKVDSKVKAALTRTYNKESHLTPYAVESAAAKKKKTSDVEDSQNP
HASGDEDGMDVDGMIKQAKKKPVTSTKGRAKKSKTKASLSTSKKRSKK
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgaaaattttttagtccaccttctaagaaaaagtctactgaagatgatttt
gttaagaagaagacaaagtatacatcttcaaaaaagaaaggagttctttttgattcagat
acttccgacgaggacccaattccgaaacaagttaaacaaaaattgaatacttcagacatc
atatacgcctcagatgaagagaagcagacccacaaaaaatctaagcttaaaaagaaagca
gataagtcaattgacaaaccgttaaataaaacaactccaagtgaatttttcggttcattc
aaaccaagtaataagagtcgtgtgacaaaacgcaaagcatcagatgaagctcctgaggcc
aaacctaaagtgaagaagtgtgttgaaattgacctgcttgatgaattagatggtcatcta
cctaaacttcccaatggatccaagaaaacagaaagtatttcaagcaagctggccaaagga
gttgcttcccaaatggatgcgaacccgaagtcaaacggcataaaagcaaaaaattcagaa
ccttgtaaaacacaagagtcagtatctaaaaaaccaaagaaaacctctccaaaaaaagtg
aaggcagagtcggacacatctaagataaagcaggagttaaatgcgttaaaatgcacaaaa
ataaaaaaagatgctgaaattaaacaagcatccacagctgagagcaaaaacacaccaagg
aagagagtagcttccacagaagatcaatcagacccaacaagtgcaaagaaagaaaacttt
ttaaaatacaaacagtggcaaaatagaagtggtccatcagcacctggctccaaattaatc
ccaaaggctgctgacttctgtctggaaggaaaagtgtttgttgtaactggagtacaggag
tcgttaacccgggacgaaattcgttctctaattgaaagatatggaggaaaggtgactact
tcggtgagcagtaggacctcatatctcattactggagaggatgcaggagaatcaaaatta
aaaaaggctgaacagcataaaaccaaagtgattagtgaagatgaatttcttgatttgctt
cggactttaccaggaaagaaatcaaaatatgaaattgataatgattcttcaccagttaaa
cataaaacaaaaggggctacaatgtccagaagtttgtcagaaccatcacaaaaggctgtc
aacacacaagccaagttgaagaaagagaagagtttacagagtccttccagctcacaggaa
tccagcagctccttaacagcatctcagaaaccaacagctggggatgaaaatttgaaacta
atgtgggttgataagtataagccaaagacaaccaagcaaatcataggacaacaaggagca
agcagcaacatgaataaactcatgaaatggctcaaaaactggcatgctaacaatcggacg
gcagaaggaaagaaaaagccaaagcccaaaatcaaccagtggggcggaggggatccaact
ggtgcgagcttcaaagctgcgttattgtctggaccaccaggagtagggaagactaccaca
gcaacacttgtttgtgaggaactcgggttatcatttgttgaactgaacgcaagtgataca
agaagcaaacgcactttaaaggaagacgttggggagtctgtgcaaaacacaagcatatca
aatctatttggatcaggagatcataactcagctaaagatggttccaaacacgttctcatc
atggatgaagttgatggtatggcagggaatgaggatcgtggtggaatgcaagagcttata
caaatcataaaatccacaaaaattccaattatatgcatgtgcaacgatcgatcatcacaa
aagattaggtcacttgccaatcactgctttgatcttcgtttccaacgtccacgagcggag
cagataactggtgcattgatgtctatttgttataaagaaggggtcaaagttcaagcacct
gcggtgcaagctatcatcaggggatgtaatcaggatgtccgccaggtgttgcataacctg
aatatgatccaagcaagcaagagttctttgtcttatgacgatgcaaaagctcatgctgat
aaggcacaaaaagatcaaaacttgggtatatttgacatagccaagaagcttttaacttct
gagtctggatccttgtctctcctcgataaatcaaatttatttttcatggattattccatg
gttccgaaatttattcaagaaaattatccacatgtaacaccgtatgctgctaaaggcaac
ctgcataaacatctccaactgctcagcaaaacagcggacagcatcgcgtttggtgatcta
atagaaacatcaatgcggcatgatcagtcatggaatatgctaccaactcttggcctggta
tcctcagttgttccatcagatctgatgaggggtggaatgcatggaatgctcaactttcca
tctttctttggaaagctttctacaacaggtaaaaatcacagattgttgcaagatttgaag
tttcacgcctcgctttcaaccaatggttgcactgaggaaacatttaatcttgatctaatt
ccgtatatgcgatggcacctcacagagcctttgttaaagcaaagcaagggtggtgacaat
gaaatacatcgagttacaaagttgttgaatgattatgacctcataaaagatgactttgac
aacatagtagaaattggccagtaccaagggaagccgaatctcatgagtaaagtagattcg
aaagtgaaggctgctttaacaagaacttacaacaaggagagccatctaacaccatatgct
gtggagtcagcagcagccaagaagaaaaaaacttcggatgtggaagactctcagaatcca
catgcaagtggtgatgaagatggcatggatgtagatggcatgattaagcaagcaaagaaa
aaacctgttacatccaccaagggacgtgcgaagaaatctaaaaccaaagctagtctaagt
acttccaagaaaagatcaaaaaaataa
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