Clavelina lepadiformis (light-bulb sea squirt): 143458571
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Entry
143458571 CDS
T11416
Name
(RefSeq) ribonuclease 3-like isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
143458571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143458571
03009 Ribosome biogenesis [BR:
clep03009
]
143458571
03036 Chromosome and associated proteins [BR:
clep03036
]
143458571
Enzymes [BR:
clep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
143458571
Messenger RNA biogenesis [BR:
clep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
143458571
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
90S particles
RNase
143458571
Prokaryotic type
rRNA processing factors
143458571
Chromosome and associated proteins [BR:
clep03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
143458571
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Motif
Other DBs
NCBI-GeneID:
143458571
NCBI-ProteinID:
XP_076811465
LinkDB
All DBs
Position
5:16710389..16726446
Genome browser
AA seq
1308 aa
AA seq
DB search
MSGWRSHGQGPPRNSPHHPVGDNNQRPVGHYRGPLGFSSPNTQPCWRPEEQFRNPNMPPI
MAVGYPPNMPPNMGVGYQPPPWGHGQRFPGGEFHSFPPPPMPGPYPPQRKVWQPSHSHDS
GNYRESSGDGRNSPGCFHTPSASSSFSRHPSPPRRCRSPVRNESKRDTEHHNRSYRSNSY
NRGEDRSYRSRRETSHSSSRHGHRMHEDGDRRSSTERKIISASKRSRSENTSDDDISEIE
SQVDIEEEIKTLKASYVQCTQHGNMYKRIMHSDSTVEGTEKLKNLFDRFETQLSNRHKSL
WRVNEHSCASARLPSGNVGELINFNQSNPVTMKKIQLWNHHVPLTRHQRVKSTILVKKLT
ENAAKQDMTIETYLDEVQPSLPNFALSKLKSVIENGGSLNDDQETDDDDDIDRAGEVISN
IRKIKAHPDRLHDELWYNEPLQANDGPLCHCTEDARVKGIRHNIYPGEDTPLPCHSMRNN
IGKLHHYRVMVGPAINFMSSAPTLIEHNGHDFMFEGFSIFSHEPLDKIPLCDIIRFHIRY
TIYLIEETPPENFCMRGMELYHEYLFREILELYDWQAKDNKCPENNDAEYFRKFRFYPRF
VRSLPDNGKEILSLCKVLEYLLENDKPLVSETDLDWLMKCSHKEWLDYTEKVRGMIVTLP
GKKPSSLRVDQLDRYDRKPLESTTLQGHAVDDRYPMIVHFGIRPANLSYAGDPTYQRIWR
AYLKLRHLMANSPKVKASDKQKLKERENALQKFRRSKDMQREVTVELSSQGFRRTGIFSD
ICQHALLLPVLTHHLRYHLCLRNLEKTIGYQFKERKWLSHAMNHPSCQMNFGLNPDHVRN
ALSNCGLRLPRYGDSSIHYKYTRKRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAV
VGYFTSVHLFLMFPDLSEGALTTFRTVLVNNLHLALLAERLQLDEYMLYAHGPDLCRKAD
LRHAMANCFEALMGAIFMEAGLEKAQELFGRFLWETTELQNVWKDLPLHPLQEEEPISDR
RCIKGIPILQKLTKFEDSIGVQFDHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCN
LVASTYLFKLYPTHHEGHLTLLRATVVNGRTQSLVATELGMPEYVICNLDSDNPGGRAPE
WREKNLADLLEAFVASLFLDKGLEYVEGFMKVCFFPRLKEFILTQEWNDPKSCLQQCCLT
LRQEGKEPQLPTYEISQQAGPSHARKYVISVYFKGKEIGKGSGESIQRAERNAARKALNE
YNFPQLEWQRRYVAEKHDLPYQPRSNLKKIEVRPDEHPSGPVKKRKKT
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtctggctggagatcacatggccaaggcccaccaagaaattccccacaccatcctgta
ggtgataataaccagcgtccagtgggtcactacagaggtccgctaggtttttcgtcacca
aatacgcaaccatgttggcgccctgaagaacagtttagaaatccaaacatgccccctatt
atggctgtaggatatccaccaaacatgccccctaatatgggtgtaggatatcaacctcca
ccctggggccatggtcagcgttttcctggtggtgaattccattcctttccaccgcctcca
atgccaggtccttatcctccacaaagaaaagtttggcaaccaagtcattctcacgacagt
ggtaattacagagaatcatcaggggatggtagaaattctccaggatgctttcatacacca
tcagccagttcatctttttcacgtcacccatcacctcctagaagatgcagaagtcctgta
agaaatgaaagcaagagagatactgagcatcacaacagatcttatagatcaaactcctac
aatcggggcgaagatagatcatatagaagtcgccgtgaaacttcacattcttctagtaga
catgggcatagaatgcatgaagatggagacagaagaagttccactgagagaaaaattatt
tcagcgagcaaaaggagcaggagtgaaaatacatcggatgatgatatcagtgaaattgaa
tcccaagtcgatattgaagaagaaattaaaacattgaaagcaagttatgttcaatgcact
cagcatggaaacatgtacaaaagaatcatgcactctgactccaccgtggagggtacggaa
aagttgaaaaatctcttcgacagatttgaaacacaactttcaaacagacacaaatctttg
tggcgagtcaatgagcattcctgtgcatctgctcgactgccatctgggaatgtaggggaa
ctaataaactttaaccaaagcaatccagttacaatgaaaaaaatacagttgtggaatcat
catgttcctttgacccgtcatcaaagagttaaatcaaccatactggtgaagaaactcact
gaaaacgctgcaaagcaggacatgacaattgaaacataccttgatgaggttcagcccagc
cttccaaattttgctttgagcaaacttaagtctgtgattgaaaatggtggatcactcaac
gacgatcaggaaactgatgatgatgatgatattgatcgagctggagaagtcatcagcaac
atccgaaagataaaagctcatccagatagacttcatgatgaactatggtacaatgaacca
cttcaagccaatgacggccctctctgtcattgcacagaagatgcaagagtgaaagggatc
cgacataatatttaccctggcgaagacacccctctaccatgccattccatgagaaacaac
attggtaaactgcatcactaccgtgtaatggttggacctgcaatcaattttatgagttct
gccccaactttgatcgagcacaatggccatgacttcatgtttgaaggattttctattttc
tcccatgaaccattggataagattcccttgtgtgatatcattcgttttcatattcgctac
acaatatatttaattgaagaaacaccacccgaaaacttttgcatgaggggtatggaactg
tatcatgaatacttgttcagagagattcttgaactctatgactggcaagcaaaggataat
aagtgccctgaaaacaatgatgcggaatatttccgaaaatttcgcttctatcctcgcttt
gtgaggtctcttcccgataatggaaaagaaatattatcactttgcaaggtcttagaatac
ctcttggaaaatgacaaacctcttgtctctgaaactgacttggactggctgatgaaatgt
tcgcacaaagagtggcttgactacacagaaaaagtccgtggaatgatcgtgacattacct
ggaaagaagccaagttcgctccgtgtggatcagcttgatcggtacgataggaaacctctg
gaatctacaacacttcaggggcatgcggtagatgatcgatatcccatgattgtgcacttt
ggcataagacccgccaacttgagctacgcaggagatccgacctatcagcgcatatggaga
gcttacttaaaacttcgccatctaatggcaaattcaccgaaagtgaaagccagtgacaaa
caaaagcttaaagaaagggagaacgccttgcaaaagtttagaagatccaaagacatgcaa
cgggaagttacagtggaacttagcagtcaggggtttcgaagaacaggaatcttctctgat
atttgccaacacgctcttctactgccggttttaactcaccatctcaggtatcacttgtgt
ttgagaaatttggagaagacgattggatatcagttcaaagaaagaaaatggcttagccac
gctatgaaccatccaagctgtcagatgaatttcggtttgaatccagatcacgtgagaaac
gcgctgtccaactgtggacttcgattgccgagatatggagatagttcaattcactacaag
tacaccaggaaacgaggaatcaccactttgattcgtatcatggcacgacttggccagcaa
cgcccagtattgtcgccgatcgaacacaacgaaagacttgagttcttgggggatgccgtg
gtcggctacttcactagtgtccatctctttctcatgtttcctgatctatcagaaggggct
ctgaccacgtttcgaacggttctggtcaataacttgcatctcgctttgcttgctgagaga
ctacagttggacgagtacatgctctatgctcatggacccgacctgtgtaggaaggcagac
ttacgtcacgccatggcaaactgctttgaagcgctcatgggcgccattttcatggaagct
ggcctggaaaaagcccaagagctgtttggaagatttctttgggaaacaactgaattgcaa
aatgtgtggaaagatctgcctttacacccgttacaggaggaagagccaatcagcgatcga
cgttgcataaagggaattccgattttgcaaaaattgacaaagttcgaggattcgatcggt
gttcagttcgatcatattcggctgctagcgaaagcgtttacttggcgtaatgtccacgag
aacatcctaacccacggccacaaccaacgtttggagtttcttggtgattcagtttgcaat
ttagtggcgtccacatacctcttcaagctttatccaacccaccacgaaggacatttgacc
ctacttagggcaacggtcgtgaacggacgaacacaatccctggttgccaccgaacttggc
atgccagaatatgtcatatgcaatttggatagcgacaatccaggaggacgcgcaccagaa
tggcgggagaagaatttggctgatctgcttgaagccttcgtggcttcactcttccttgat
aaagggctggaatatgttgaaggtttcatgaaagtctgctttttccccaggctgaaggaa
tttatcctcactcaagaatggaatgatcccaagtcttgcctacagcagtgttgtctgacc
ttacgacaagaagggaaagaaccgcagttgcctacctatgaaatatcacaacaggctgga
ccatcccacgcccgaaagtatgttatttctgtttacttcaaaggcaaagaaattgggaaa
ggaagtggagaaagcatacaaagggccgaaaggaacgcggcaaggaaggcattaaatgaa
tataacttcccacagttggagtggcagcgacgctatgtagccgagaaacatgatcttccc
taccaacctcgatcaaacttgaagaaaattgaagttcgcccggatgaacatccgtcagga
ccagttaagaaaagaaagaaaacctga
DBGET
integrated database retrieval system
