Clavelina lepadiformis (light-bulb sea squirt): 143458973
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Entry
143458973 CDS
T11416
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
clep03016
]
143458973
Enzymes [BR:
clep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
143458973
Transfer RNA biogenesis [BR:
clep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
143458973
Prokaryotic type
tRNA splicing ligases
143458973
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GFIT
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NCBI-GeneID:
143458973
NCBI-ProteinID:
XP_076812005
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Position
5:16353505..16360926
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AA seq
504 aa
AA seq
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MPRTFDEELQFLEKKSPCCWTIKKDFVPNMKVEGLFYVNDHLEKLMLEELRNSCRGNIGG
FLPGVKQIANVAALPGIVKNSIGLPDVHSGYGFAIGNMAAFDMDDPEAIVSPGGVGFDIN
CGVRLLRTNLDETDVQPVKEQLCQSLFDHIPVGVGSKGVIPMAAKDLEEALEMGVDWSLR
EGYAWAEDKEHCEEYGRLLQADQSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKH
AANKMGIDHKGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDKIVVNDRQLACAHITSQ
EGQDYLKGMFAAGNYAWVNRSSMTFLTRQAFGKVFNSSPDDLDMHLIYDVSHNIAKVEEH
MVDGKQKTLLVHRKGATRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQTGMEN
TFGTTCHGAGRALSRAKSRRNLDYQEVLDRLADLGISIRVASPKLVMEEAPESYKDVTEV
VNTCHAAGISKKAIKLRPVAVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcacttttgatgaagaattgcagtttcttgagaaaaagtccccatgttgttgg
accatcaaaaaggattttgttccaaatatgaaggttgaagggcttttttatgtgaatgac
cacttggagaagctaatgctggaagaactgagaaattcatgcagaggaaacattggtgga
ttccttcctggagtcaaacaaattgcaaatgttgctgcactgcctggtattgtcaagaat
tcaattggattaccagatgttcattcgggctatggttttgcaataggcaacatggctgcc
tttgatatggatgaccctgaggccattgtttcacctggcggagttggtttcgatatcaac
tgtggtgttcgtcttttaagaactaacttggatgaaactgacgtgcaaccagttaaagaa
cagttatgtcagtccctctttgaccatattccagttggagttggctccaaaggtgtcatt
cccatggctgccaaagatcttgaagaagctttagagatgggagttgactggtcattgaga
gaaggatatgcatgggcagaagacaaggaacattgtgaggaatacggaagattgttgcaa
gcagatcagtcaaaagtttcatccaaagccaaaaagcgtggcttgccacagctgggaaca
ctgggtgctggaaatcattatgctgaaattcaagttgttgatgaaatttttgataagcac
gcagcaaataaaatgggaatcgaccataaggggcaagtttgcgtgatgatccattgtggc
agtagaggactaggacatcaggtggctacggacgcacttgttgctatggagaaggcgatg
aaaagagacaagatcgttgtaaatgatcggcagcttgcttgtgctcacattacatcccag
gaaggccaagattacctgaaaggaatgtttgccgctggaaactatgcttgggttaataga
agctccatgactttcttaacaagacaggcttttggaaaagtttttaactcgtcacctgat
gatcttgacatgcatcttatatatgatgtatcacataacattgccaaggtggaagagcac
atggtagatggaaaacaaaagactcttctggtccacaggaaaggagcaacgagagctttt
cctcctcatcacccactgatacccgtggattatcagttaactgggcagcctgtccttatc
ggtggcacaatgggcacctgcagctacgtactaactggaacacagactgggatggaaaat
acatttggaactacatgtcatggagcgggtcgagctttgtctcgggccaagtcgagaaga
aacctcgactaccaggaagtgttggatagattggccgatcttggaatttctatccgtgtg
gcatcccccaaacttgttatggaagaggctccggaatcgtacaaagatgttactgaagtt
gtaaacacttgtcacgctgccggtatcagcaaaaaagcgattaaattaaggccagttgct
gtaattaaaggctaa
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