Clavelina lepadiformis (light-bulb sea squirt): 143459102
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Entry
143459102 CDS
T11416
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143459102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143459102
03041 Spliceosome [BR:
clep03041
]
143459102
03009 Ribosome biogenesis [BR:
clep03009
]
143459102
03016 Transfer RNA biogenesis [BR:
clep03016
]
143459102
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143459102
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
143459102
Spliceosome [BR:
clep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
143459102
Complex C
U4/U6.U5 tri-SnRNP related factors
143459102
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
Pre-60S particles
Helicases
143459102
Transfer RNA biogenesis [BR:
clep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
143459102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143459102
NCBI-ProteinID:
XP_076812190
LinkDB
All DBs
Position
5:complement(13762989..13771321)
Genome browser
AA seq
1038 aa
AA seq
DB search
MTDFRDDLFNVFEEETEQLSKKNTSKLSKRGKTPDASESSKKQKLDSHENVKDFPSNKIK
SQENNEGLQLQKEEHEDLSNVLESLPKVQTSSMDSLISGCTHEVAYVTGTDLPQLRPRIG
KQAKEYKFILDPFQQEALLCLDNQQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTP
IKALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVV
FDEIHYMRNKERGVVWEETIILLPDNVHYVFLSATIPNARQFASWICHLHKQPCHVVYTD
YRPVPLEHYIFPTGGNGLHLVVDDHGDFREDNFNMAMAVLRDAGDNAKSDFSRKGKKGGM
QGKSACVQIVELVMERKFLPAIVFSFSKKECEFYAKQVSKLAFNSGEERKLVQEVFNNAM
DSLSDEDRLLPQVEAVLPFLLNGIGIHHGGLLPIIKETIEILFSEGLIKVLFATETFSMG
VNMPAHTVVFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDERGIVIMMVDEKLSPSVG
KALVKGSSDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMMKNIAKL
EKEHTEVKIKDEEDCMTYYRIRQQLDKLAKQLEDFVHMPKYCLSFLQPGRLVKVRNSDQE
FGWGIVVNFQKKQPKPVGLKKAEDIEPEFIVDVLLNCDKDSIHSTAIRLPRPAKGNPRQN
EMAVIPVMIQLITAISSVRLFLPKDLRPLDNRQSLLLSLEEVNKRFPDGIPLLDPVEDMN
IKDERMKSIVRKIEAFEKRMYKHSLHKRDDMSDVYKLCEKKMKLANDVKEAKRALKRART
ILQMDELKCRKRVLRRLGYATVADVIETKGRVACEISAADELLLTELVFNGVFNPLTPGQ
CAALLSCFVFDEKSKSVPKLSEALAGPLRQMHKAARRIAKVSTEAKLPLDEEEYVQSFKT
MLMDVVHAWCNGSTFSQIAEMTEAYEGSIIRCMRRLEELLREMCHAAKAIGNTELENKFA
EGIRLIKRDIIFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttcagagatgacttgtttaatgtttttgaagaagaaactgaacaactttca
aagaaaaatacaagtaaattgtcaaagcgtggaaaaactccagacgcatcagagagctca
aagaaacaaaaacttgatagccatgaaaatgttaaagattttcctagtaataaaataaaa
tcacaagaaaacaatgaaggtcttcagttgcagaaagaagagcatgaggatttgtcaaat
gttttggagtctttgccaaaggttcaaacttcgtcaatggattctttgatatctggttgt
actcatgaagtggcatatgtaaccggaactgatttgccccaactacgcccgcgtatcgga
aaacaagcaaaagagtataaatttattcttgatccctttcagcaagaagctctcctctgt
ttggacaatcagcagtcagtcttggtatctgctcacacatctgctggcaaaacagttgtt
gcagaatatgcaattgcaatgtcacttcgagacaaacaaagagtgatatacacaactcca
atcaaggctttgagtaatcaaaaatatcgtgatttatatgaagagttttcagacgttggt
ttgatgactggtgacgtcactataaatccaacagcttcctgtcttgttatgacaacagag
attttgaggagcatgttgtatcgtggatcagaagtaatgcgtgaagttgcttgggtcgtt
tttgatgagatacattacatgagaaacaaagaacgtggtgtagtatgggaggagacaatt
attttgttgcctgacaatgtccactatgtttttctttctgctacaataccaaatgctcgg
cagtttgcatcgtggatttgtcatctgcacaagcagccctgccatgttgtttacacagat
tacaggccagtgcctttagagcattacatatttcccacaggcggtaatggattacatctg
gtggtggatgatcatggcgactttcgggaagataacttcaatatggccatggctgtgtta
agagatgcgggggacaacgccaaaagtgatttttcgaggaaaggaaagaaaggaggaatg
cagggaaaaagtgcttgcgtccaaattgttgagctggtaatggaaagaaaatttctccca
gccatcgtattttcatttagtaaaaaggaatgtgaattttatgctaaacaagtctcaaag
ttggccttcaactctggagaagagaggaagctggttcaagaagttttcaacaacgcaatg
gattcgttatcagatgaagatagacttctacctcaagttgaagccgtgctcccatttttg
ttgaacggcattggtattcaccatggtggccttctcccaataatcaaagaaaccatcgaa
attctattctcagaaggtttaataaaagtcttgtttgccactgaaacattttccatggga
gtaaatatgccagcccacactgttgtctttacaagtataaggaaatttgacggaaaagat
tttcgatggattactggtggggagtacatacagatgagtggcagagcaggccgtagaggt
atggatgaaagaggtattgtcatcatgatggttgatgaaaaactatctcccagtgttgga
aaagcacttgttaaaggttcatcagatccgttggattcagctttccgtttaacgtacaac
atggtgctgaacctgcttcgtgtggaagaaataaatccagagtatatgttagaaaagtct
ttctatcagtttcagcattacactgctattccagaaatgatgaaaaatatcgcaaaattg
gagaaagaacacactgaagtgaaaattaaagatgaggaagattgtatgacatactatcgt
attcgtcagcagcttgataaacttgccaagcaactggaagactttgtgcacatgccgaag
tactgtctatcttttcttcaacctggtagacttgtcaaggttagaaattctgatcaggag
tttggctggggtattgtggttaactttcagaagaaacaacctaaacccgttggacttaaa
aaagctgaagacattgaaccagaattcattgttgatgttttgctcaattgtgacaaggat
agcatacattccactgccatcagactgccgagacctgccaaaggcaatcctagacaaaat
gagatggcagtcatacccgtgatgattcagctcataacggccattagtagtgttcgtctc
ttcctaccaaaagaccttcgacctctagataaccgacaatctctcctcctttcacttgag
gaagttaataagcgcttccctgatggaattcctctgcttgatccagttgaagatatgaac
ataaaagatgaacgcatgaagtcgatcgttcgaaagattgaggcgtttgagaagaggatg
tacaaacattctttgcataaacgtgacgacatgtcagatgtgtataagctgtgtgaaaag
aaaatgaagttggccaatgatgtgaaggaagctaaacgtgccctgaaaagggccaggaca
attttgcagatggatgaactaaaatgtaggaaaagagttttgaggagactgggttatgca
actgtagcagatgtgattgaaacaaaaggtcgtgtggcgtgtgagataagtgctgctgac
gaactattgctcacagagcttgtgtttaatggtgttttcaatccgttaacgcccggccag
tgcgcagcattattgtcatgttttgtctttgatgaaaagtctaaaagcgtaccaaagttg
agcgaagcactggctggaccgttgagacaaatgcacaaagccgcaagaaggatagcaaag
gtttcaactgaagcaaaattaccattggatgaggaagaatatgttcaatcttttaaaaca
atgttgatggatgtggtgcatgcttggtgcaatgggtcaacattctcccagattgcagaa
atgacagaagcatacgaggggagtataattcgatgcatgcgaagactagaagagcttctt
cgtgaaatgtgtcatgcagcaaaagcaattggaaacacggaactggagaataagtttgcc
gagggaattcgtttaataaaaagggacattatatttgctgccagcttatatctttga
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