Clavelina lepadiformis (light-bulb sea squirt): 143459265
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Entry
143459265 CDS
T11416
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 1-like
KO
K11832
ubiquitin carboxyl-terminal hydrolase 1 [EC:
3.4.19.12
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
143459265
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
clep01002
]
143459265
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clep04121
]
143459265
03400 DNA repair and recombination proteins [BR:
clep03400
]
143459265
Enzymes [BR:
clep01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
143459265
Peptidases and inhibitors [BR:
clep01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
143459265
Ubiquitin system [BR:
clep04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
143459265
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
143459265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
DUF8542
JetA
Phage_integr_3
zf-C3HC4_5
Motif
Other DBs
NCBI-GeneID:
143459265
NCBI-ProteinID:
XP_076812455
LinkDB
All DBs
Position
5
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AA seq
643 aa
AA seq
DB search
MRFDVKEDVSEKKVFIPFIGLRNMGNTCYLNSILQILYHCPEFGLELLKSIDCLQQEQQK
TRNYNNVCLKTDLERSIKLMKELNALFHNISENQRKLQQQQQSFHEQELIEISAICPELL
VNSLRDVYPIFEPYTQQDAQECFHCILNVCKSALSAFCAKEDNAKAFPQGAQKITHKMLG
GRRLIPSQVLTAAENKKVDVTTEPLLKKQPAVPQPKPRKSCRKGRHNHNEGNTIGDEENT
LSSPHKETSMSSPSGCFDRIKRKRKVLNKDSQKLSATNSNQKQFIVKLGKDDESSTDCKI
PPAKRSRVGFLKSSSHKTMPAMFSSLMSKKTNAIHEESKTVQNVQPSLKNEPSNSTSDNQ
PSKQQMKFNSSSSVFHNMCQSNEDETSTSGQQSCTGNFIEQLFQGELLSTTRCMECENEV
KRDEKFQDISLPVKESSLGTRDQLSGFMKQDLMENSVCSEDQKCSLSWALSEFTATETMD
GENKYFCDFCSRLSEGERRIRFKRLPPILAFHLKRFSTTNGTSLDFTTSVTKINSPFQIP
KTMQFREWCCTNCIEKDLKYELFGIVVHSGTTITGGHYLSYVKCKRNNYADLVKYEGKWL
ELDDEHCRMLSEDQVNAALLDGDFELHARSPYMLFYNRVESAC
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcggtttgatgtaaaagaagatgttagtgaaaagaaagtttttattccatttattgga
cttcgaaatatgggaaatacatgctatttaaacagcattttacagattttataccattgc
cctgagtttggcttggagctactgaaatcgattgactgtttgcaacaagagcaacagaaa
acaaggaactataataatgtatgccttaaaactgatttggaaagaagtattaaattaatg
aaagaattaaatgcactattccacaatatcagtgaaaatcaaagaaaacttcaacaacaa
caacaaagttttcatgaacaggaacttattgaaatttctgccatttgtccagaattgctc
gtcaattctttaagggatgtttatcctatatttgagccatacacacagcaagatgcccag
gagtgttttcattgtatactcaatgtatgcaaatcagcattgtccgctttttgtgcaaaa
gaagataatgctaaggcatttccacaaggtgcacaaaagataactcacaagatgttagga
ggcagaagactgatcccgagtcaggtgttaactgctgcagagaacaaaaaagttgatgtt
acaacagagccacttctcaagaaacaaccagctgttcctcaaccaaaaccccgtaaatcc
tgtagaaaagggagacataaccataatgaaggcaatactatcggtgatgaagaaaacaca
ttgtcatcacctcataaggaaacttctatgtcatctccttctggatgctttgatagaatc
aaaagaaagcgtaaagttctaaataaagactcccaaaaactctcagcaacaaacagtaac
cagaagcaatttattgtcaaactaggcaaagacgatgaaagcagcactgattgcaaaata
cctccagcgaagagatctcgggttggtttcttaaaaagttccagtcataaaacaatgcca
gctatgttcagttctcttatgtctaaaaagactaatgctatacacgaagaaagcaaaact
gtccaaaatgtgcagccatcactgaaaaatgaaccatcgaattcaacttcagataaccaa
ccctcgaagcaacaaatgaagttcaattccagtagttcagttttccacaatatgtgccaa
tcaaacgaagatgagaccagtacatcaggacaacaaagttgtactggaaacttcatagaa
cagctttttcagggtgaactcctctcaacaaccagatgcatggagtgtgaaaacgaggtc
aaaagagacgaaaaattccaggacataagtttgcctgtgaaagaatcctcgctaggaact
cgtgatcaactaagtgggtttatgaaacaagatttgatggaaaattctgtttgtagtgag
gatcagaagtgtagcttgtcctgggccttatcagaattcactgccacagaaaccatggat
ggagaaaataaatatttttgtgatttctgctccagactttctgaaggagaaagaagaatt
cgctttaaacgattaccgcctattcttgcattccacttgaagcgattctcaacaacaaat
ggaacctcactggattttaccacatctgtgaccaagataaatagtccatttcaaattccc
aaaacaatgcaatttagggaatggtgctgcaccaactgcattgagaaagatttaaagtat
gaactgttcggtatcgttgtacacagtggcacaacaatcactgggggtcattacttgtca
tacgttaagtgcaagagaaataattatgcagatttagtaaaatatgagggaaaatggttg
gagttagatgatgaacactgtcgtatgttatctgaagatcaagttaatgcagcattgctt
gatggagatttcgaacttcacgccagatcaccatacatgctattttacaatcgtgtcgaa
tctgcctgttga
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