Clavelina lepadiformis (light-bulb sea squirt): 143459519
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Entry
143459519 CDS
T11416
Name
(RefSeq) THO complex subunit 3-like
KO
K12880
THO complex subunit 3
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143459519
09122 Translation
03013 Nucleocytoplasmic transport
143459519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143459519
03041 Spliceosome [BR:
clep03041
]
143459519
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
143459519
Spliceosome [BR:
clep03041
]
Complex C
Other components
EJC/TREX
143459519
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
143459519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143459519
NCBI-ProteinID:
XP_076812837
LinkDB
All DBs
Position
5:complement(2154074..2157264)
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AA seq
322 aa
AA seq
DB search
MTNFAEQMKQHFKQNSKTKEHSAHTAKVHSVAWNKDGKKLASGSYDQTASVFTLDRDRLT
REFSCKGHTDSVDQLCWNPTNSEVFATASGDKTVRVWDGRSGNCTSTINTKGENINICWS
PNGQSIAVGNKEDLVTFIDTKTFKPRAHEQFKVEVNEITWNNTNDLFFLTTGLGTVQIYS
YPDLKLIQSLQGHTANCICIKFGNRGKYFATGSADAIVNLWDLSELVCVRTFSRLDWPVR
TLSFSHDGLMLASASEDHFIDISCVETGENICEVPCDSPTFTVAWHPKHRLLAYACDDKD
KYNRDTGNVKLFGLSNESSSSS
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgacaaactttgccgaacaaatgaaacagcattttaaacaaaatagcaagacaaaggag
cattcggcgcacactgcaaaagttcactccgtggcgtggaacaaggatggaaaaaaactt
gcctcgggatcttatgatcaaaccgccagcgtttttacacttgatcgtgataggcttact
agagaattcagttgcaagggccacactgacagtgtcgatcaactttgctggaacccaaca
aactctgaagtctttgcgaccgcatcgggcgacaaaaccgttcgagtgtgggatgggagg
agtggaaattgcacatccacaattaatacgaaaggtgaaaacatcaacatatgttggagt
ccaaatggacagagtatcgctgtcggcaacaaagaagatctcgtcactttcatagacaca
aaaacatttaaaccacgtgctcacgaacagttcaaagttgaggttaacgaaattacatgg
aacaacaccaatgatcttttcttcctaaccacggggcttgggactgtgcagatttacagt
taccctgacctaaaactcatccagtctttacaaggccacactgctaattgtatttgcatc
aaatttgggaaccggggaaaatattttgccactgggagtgctgacgctatcgtaaactta
tgggatttgtctgaacttgtttgcgtgagaacgttttcaagattagactggcctgtcagg
acattaagttttagccacgatggattgatgttagcctccgcatcggaagatcatttcatc
gatatttcttgtgtggagactggtgaaaatatatgtgaagttccatgtgacagccccacc
tttacagtggcctggcaccccaagcacaggctgcttgcgtatgcgtgtgatgacaaggac
aaatacaacagagacactgggaatgtgaaactatttggtttgtctaatgagagctcgtca
tcttcataa
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