Clavelina lepadiformis (light-bulb sea squirt): 143459852
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Entry
143459852 CDS
T11416
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143459852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143459852
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
143459852
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
143459852
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
143459852
NCBI-ProteinID:
XP_076813269
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All DBs
Position
5:3997960..4000296
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AA seq
199 aa
AA seq
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MDAVVGQVCIPGERLSSVELCQAGPGTYVRQGYVFASLAGLVAKEREKSSDLPLVSVKSK
NKAQSVPEIGAIVTCKITQITSRFAKCHIIAVNNKTLSMPFRGMIRKENVRETDRDRVEI
YKCFRPGDIALAKVLSLGDASCYLLTTAENELGVVVAHSDEGVALIPLSHNEMQCPKSFV
KENRKVARPQSEHLAFPER
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagttgtgggacaggtttgcattccaggtgaaagattatccagtgtagagctg
tgtcaagctggtccgggaacttacgtccgtcaaggttacgtttttgcgtcactggcaggt
ctagtcgcaaaggagcgggagaaatcctcagatctgcctcttgtttctgtgaagtcaaaa
aacaaggcgcaaagtgtaccagaaataggtgccattgtcacatgcaagataacccagata
acttcacgttttgcgaaatgccatatcattgctgtcaacaacaaaactctctccatgccg
tttcgtggaatgattcgaaaagaaaacgttagggagactgatcgagaccgtgttgaaatc
tacaagtgtttcagaccaggagacattgcactggctaaagttctttcactcggagacgca
tcgtgctatctgcttacaacagctgaaaatgaacttggcgttgtggttgcccatagcgac
gaaggagtggcattgattcctttgagtcacaacgagatgcaatgcccaaagagttttgta
aaagaaaacagaaaagttgcaaggccccaatctgagcatctggctttcccagagcggtag
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