KEGG   Clavelina lepadiformis (light-bulb sea squirt): 143460108
Entry
143460108         CDS       T11416                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
clep  Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03020  RNA polymerase
clep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    143460108
  09124 Replication and repair
   03420 Nucleotide excision repair
    143460108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clep03021]
    143460108
   03400 DNA repair and recombination proteins [BR:clep03400]
    143460108
Transcription machinery [BR:clep03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     143460108
  RNA polymerase III system
   RNA polymerase III
     143460108
  RNA polymerase I system
   RNA polymerase I
     143460108
DNA repair and recombination proteins [BR:clep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      143460108
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NA-iREase1 Mrr_cat
Other DBs
NCBI-GeneID: 143460108
NCBI-ProteinID: XP_076813613
LinkDB
Position
5:complement(7646900..7653282)
AA seq 210 aa
MDDEAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLDEFKEEFGDKPSERKPGRQDLTI
LVAHNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQQEHIQRAIIVVQQSMTPSAKQSLFD
MAPKYILEQFLEQELLINITEHELVPEHVVLTPEEKQELLTRYKLKDHQLPRIQAGDPVA
RYFGLKRGQVVKIVRPSETAGRYVTYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggacgatgaggcagaaacctaccgtttatggaggattcgaaaaacagtaatgcagtta
tgtcatgatcgaggttatcttgttacacaacatgaattagatcagtcacttgatgaattt
aaagaagaattcggagataaaccgagtgagagaaaaccaggacgacaagatcttaccata
cttgttgctcacaatgatgacccaactgaccaaatgtttgttttttttccagaggaaccc
aaagttggtgtgaagacaataaagacctactgccagagaatgcagcaggaacacatacaa
cgtgctataattgttgttcagcagagcatgactccatcagcaaagcaatcacttttcgat
atggctccaaagtacattctggagcaattcctggagcaggagttgctcataaacatcact
gaacatgagcttgtaccggaacacgttgtattgacaccagaggaaaagcaagaactttta
actcggtataaattgaaagatcatcagttgcctcgaatacaagccggcgatcctgttgcg
agatacttcggacttaaacgtggtcaagttgtaaaaatcgtccggcctagtgaaaccgcc
ggacgttatgtcacatacagattggtacagtaa

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