Clavelina lepadiformis (light-bulb sea squirt): 143460867
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Entry
143460867 CDS
T11416
Name
(RefSeq) transportin-1-like isoform X1
KO
K18752
transportin-1
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
143460867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143460867
03009 Ribosome biogenesis [BR:
clep03009
]
143460867
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
143460867
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
143460867
Pre-60S particles
143460867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TOR1L1_N
HEAT_GCN1
TPR_IPO5
TPR_IMB1
HEAT_2
IBN_N
Arm
Vac14_Fab1_bd
HEAT_EF3_N
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
HEAT_GCN1_C
HEAT_ECM29
PDS5
PIK3R4-like_middle
Adaptin_N
MMS19_C
Ltn1_1st
Dopey_N
TPR_Trm732_C
INTS7_N
TPR_TTI1_C
Motif
Other DBs
NCBI-GeneID:
143460867
NCBI-ProteinID:
XP_076814641
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All DBs
Position
5:6198257..6211001
Genome browser
AA seq
962 aa
AA seq
DB search
MLCRYKSHLKTIKPIVLVFNWFCEFTGLHNMTWQPDASGLAQIIQLLKESQSPDTEIQRQ
VQQKLEALNGYPDFNNYLIYVLTKLTTEDEPTRSLSGLILKNNVRAHFTNLPPNVAEFIK
QECLKAVGDPSALIRATVGILITTIAAEGDLVNWQDLLPALCQLLDSEDYNTCEGAFGAL
QKVCEDCADQLDSPQLQQSLDVMIPKFLQFFKHSSPKIRSHAISCVNQFIIGRTQALMNH
IDDFIQGLFSLASDENVEVRKNVCRALVMLQEVRMDKLRPQMGNIIEYMLVRTQDDDETV
ALEACEFWLSLAEQTSDCTEFLRPFLPRLIPVLINGMKYSEIDVILLKGDVEEDEMIPDK
DEDIKPRFHKSKVHSMHNDVSNQGHVHNGVDFSSGDVVGQGLPVHRPCKVKGRDIMAAGD
GHHDEDDEDGGIDDDDALSDWNLRKCSAAGLDVLANVFHEELLPFVLEKLNDLLFHQEWV
LRESGILVLGAIAEGCMNGMLPHLPKLVPFLTETLNDKKALVRSITCWTLSRYAHWIVTQ
SQQNGHDLYLKPLMNELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLHFILQTLVY
AFNKYQHKNLLILYDAIGTLADSVGNHLNKAEFIHMLMPPLIEKWNSLRDEDKDLFPLLE
CLSSVATALQSGFLPYCEPVFHRCVNLVQNTLTQSMNYMQNQEQYEPPDKDFMIVALDLL
SGLAEGLGSGIEQLVQSSSLLPLMYQCMQDQMAEVRQSSFALLGDLTKACFQHVKPCIGE
FMPVLARNLNPELISVCNNATWAIGEISIQLGSEMQPFISLMILPLVRIINQPTTPKTLL
ENTAITIGRLGYVCPNDVAPMLPQFTRPWCTSLRNIRDNEEKDSAFRGICAMISVNPGGV
IQDFIFFCDAVASWMHPKPDLKEMFYKILHGFKDQVGDETWTRFSDQFPQPLKERLSANY
GV
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgcaggtataagtcacacttaaagacaattaaaccaatagtactggtattcaat
tggttctgtgaatttactggactgcataatatgacttggcaaccagatgcatctgggctg
gcacagattatccagcttctgaaagaatcacaatctccagacacagaaattcaaagacaa
gtgcaacagaaactggaagcactaaatggttatcctgatttcaacaattatttgatatat
gtcttgactaaacttacaacagaagatgaaccaacaagatccctgtctggtctcatactg
aagaacaatgttagagcacatttcaccaacttaccaccgaatgttgctgaatttataaaa
caggagtgtttgaaggctgttggtgacccatcggcattgatccgtgcgacggttggtatt
ttgattactacaattgctgcagaaggtgatcttgtcaactggcaggacttgttgccagca
ctttgtcagttactcgattctgaagattacaacacctgtgagggtgcatttggagcattg
caaaaggtctgtgaggactgtgctgaccagctggactctccacagttacaacaatctctt
gacgttatgataccaaaatttctccagtttttcaagcactctagtcccaaaataagatct
catgccatatcgtgtgtcaatcagttcattattggcagaactcaggctttaatgaaccat
atcgatgactttattcagggtctcttctcacttgcaagtgatgaaaatgttgaggtgagg
aaaaacgtgtgtagagcgttggtcatgctgcaggaagtcagaatggacaaattacgcccg
caaatgggaaacataattgaatatatgcttgttcgaacccaagatgatgatgaaactgtt
gcgcttgaagcttgtgagttctggttgagcctcgccgaacaaacctcagattgtacagag
tttcttcgtccttttctgccaaggttaattcctgttttgataaatgggatgaaatattct
gaaattgacgtcattttactgaagggcgatgtagaagaggatgaaatgatacctgacaaa
gatgaagacataaaaccaagatttcacaaatccaaagtccacagcatgcacaacgacgtg
tcaaaccagggtcatgtgcacaatggggtcgacttcagttctggtgatgttgtagggcaa
ggcctcccagtacacagaccgtgtaaggtgaaaggtcgtgatattatggcagcaggagat
ggccatcatgatgaagatgatgaggatggtggtatagatgatgatgatgctttgtccgac
tggaatctacgaaagtgctctgctgctgggttggacgtgttggctaatgtcttccacgag
gaactactcccatttgtcctcgaaaagctcaacgaccttctttttcaccaagaatgggtt
ttgcgggagtccggcatacttgtgctaggagccattgcagaaggttgcatgaatggcatg
cttccacaccttccaaagcttgtgccttttctcactgaaacgctcaatgacaaaaaggca
ctggttagatcaataacatgctggaccttgtcaaggtatgctcattggattgtcacccaa
tcccaacaaaacggtcatgatttgtatttgaaaccattgatgaacgagctcttaaaaagg
attctagattcaaacaaaagggtgcaagaagcagcatgcagcgcttttgccactttggaa
gaagaagcctgcacggaacttgttccttacctgcactttattcttcaaacattggtctat
gccttcaacaagtatcagcacaaaaatctgctcatcctgtacgatgcaattggtactctt
gctgattcagttgggaaccatttgaacaaggccgagttcatccacatgcttatgcctcct
ctcattgaaaagtggaacagcctgagggatgaagacaaagatcttttccctttgctggaa
tgtctgtcgtcagtggccaccgctttacaaagtggttttcttccttattgtgaaccagtc
tttcatcgatgtgtcaaccttgtccaaaacacacttacccaaagcatgaattatatgcaa
aaccaagagcaatatgaaccacccgacaaagatttcatgattgttgctcttgacctcttg
agcggattggcggaaggtcttggctcgggaattgagcaactggtccagagcagtagcttg
cttcctctcatgtatcaatgcatgcaggatcaaatggctgaagtccgccagagttccttt
gcattgttgggtgatcttacaaaggcttgctttcagcatgtcaaaccttgcatcggtgaa
tttatgccggtccttgctcgtaatctcaaccctgaactcatctcagtttgtaacaacgca
acttgggcaattggtgaaatttctatccaacttggttccgaaatgcaaccatttatctca
cttatgatacttccgctggtgaggatcataaaccagccaaccacgccaaagaccttgcta
gaaaatactgcaatcacaattggtcgccttggttacgtgtgtcccaatgatgtagcacca
atgctgccccagttcaccagaccctggtgcacatcccttcgtaatattcgtgacaatgaa
gaaaaagattcagcatttcgtggcatttgtgccatgataagtgtcaatcctggtggagta
attcaggacttcatatttttttgtgatgcagtggcatcttggatgcacccaaaaccagat
ttgaaggagatgttttacaagattcttcacggtttcaaggaccaggttggtgatgaaact
tggacccgcttttccgatcaatttccccaacctttgaaagaacgtcttagtgctaactac
ggggtttaa
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