Clavelina lepadiformis (light-bulb sea squirt): 143461540
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Entry
143461540 CDS
T11416
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143461540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143461540
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143461540
Spliceosome [BR:
clep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143461540
Complex C
U5 SnRNP specific factors
143461540
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143461540
NCBI-ProteinID:
XP_076815390
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Position
6:7289091..7299795
Genome browser
AA seq
2143 aa
AA seq
DB search
MADASARSLQYEYKANSNLVLQADRSLIDRRPRDEPTGEVLTLQGKLGSIQMGDRAQRTK
PPQMEERKAKRRKRDEDEKGQANFRGRSLLSEGVDEMVGVVYKPRTKETRETYEILLSFI
QAALGDQPRDILCGAADEVISVLKNERHRDKERRKEIQSLLGPLEDTRYHVLVNLGKKIT
DFGSAKDADTADDNIDETYGVNVQFESDDEAGEDDTYGEVREGSDGEDEEMEGVEADVDM
VVSANLTNEAGDVNIAKNKELHPRDIDAYWLQRNLSKVYDDAIVSQKKAEEVLDILKTAG
DDLQCENQLVLLLGFNQFDFIKSVREHRQMILHCTLLASAQSDAARQQIEEKMKQDPMLL
AILEQLHATEKEDIIKEEQERRERLRKSKVDADLEATDADNAKTEENYQPSAAALDLEDL
EFSQGSHFMANKKCQLPDGSYRKQRKGYEEVHVPALKPKPFDDKEKLIAIDTLPKFSQAA
FEGFKTLNRVQSKLCKTALESDENVLLCAPTGAGKTNVALLCMLKEIGKHICSDGTIKLE
NFKIIYIAPMKSLVQEMVGNFGKRLANYGIKVAELTGDHQLCKEEITATQVIVCTPEKWD
IITRKSGERTYTQLVRLIIMDEIHMLHDSRGPVLEAIVARTIRSIETTQEDVRLVGLSAT
LPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQQYIGITEKKPMKRFQVMNEIVYEKVVE
NAGKNQVLVFVHSRKETGKTARAIRDMCLENDTLGHFLREGSASTEVLRTEAEQVKNLEL
KDLLPYGFAIHHAGMTRVDRTLVEDLFSDRHIQVLVSTSTLAWGVNLPAHTVIIKGTQVY
SPEKGRWVELGALDVLQMMGRAGRPQYDTKGEGVLITAHSELQYYLSLLNQQLPVESQMI
AKLPDTLNAEIVLGNVQSVKDAVNWLGYTYLYIRALRQPSLYGVDSLSDDPLLQQRRVDL
AHAAANLLAKNNMIKYDRKTGQIQVTDLGRIASHYYCTNESMATYNDLLKPTLSEIELFR
VFSLSSEFKYITVREEEKLELNKLLERVPIPVKESIEESSAKVNVLLQAYISQLKLEGFA
LMADMVYVTQSAGRLMRAIFEIVLYRGWAQLADKCLSLCKMINRRMWQSMTPLRQFRKVP
EEVVKKIEKKNFPWERFYDLGHNEIGELIRMPKMGKGLHKLIHQFPKMELSVHVQPITRS
TLRVELTITPDFQWDEKVHGNSQAFYIFVEDVDSEVILHHEYFLLKSKYATDEHVVNFFV
PVFEPLPPQYFIRIISDHWIASETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPE
FEALYEDSFPCFNPIQTQVFNAIYNGDENVFVGAPTGSGKTLCAEFALLHAFTRDTEARC
VYVTPVEAVAELIYKDWREKFEVHLGKKVSLLTGETSTDLRLISRASIIIATSERWDVIS
RRWKQRRNVHSVSLFIVDEIHLLGGETGPEVEVVCSRMRYIASQLEKKIRIIAMGSSLAN
ARDVAQWLGCSAMNTFNFHPNVRPVPLELHIQGFNITHTQSRLLSMAKPVYNAIMKHSPK
RACIIFVPSRKQSKLTAVDILTYAAADGTPQRFLHCNESELDAYLEHVKDPTLKETLSNG
VAYLHDGTTQLERTVVEQLFSSGAVQILVASRSLCWGLNLSGHLVIVMDTQHYNGKIHAY
VDYPIYEVLQMIGRANRPLKDEEGKCVVMCQNSKKDFFKKFVYEPLPVESHLDHCLHDHF
NAEIVTKIIENKQDAVDYLTWTFLYRRMSQNPNYYNLQGVSHRHLSDNLSELVENTLADL
EQSKCISIEDEIDITPLNLAMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYE
SIPIRRHEDNTLKQLLPKVQYKPQNIRYTDPHIKTNLLLQAHLSRLQLPAELQSDTEQIL
GKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSRDSYLKQLPHFGSDLIKKCSD
KEIESVFDILEMEDNDREDLLQMSEAQMADVARFCNRYPNIELSYDVQDPENLHAGSPVV
VLVTLEREDEVAGPVIAPFFPQKREEGWWVVVGDPKTNSLISIKRLTLQQKAKVKLDFIP
PSAGSHSYTLYFMSDAYMGCDQEYKLQINVRESEGESSGSESD
NT seq
6432 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcatctgccagatcgttacagtatgagtacaaggcaaattctaatcttgtc
ttgcaagctgatcgttccttgattgatcgtcgcccgagagatgaacctacaggggaagtt
cttacgttgcaagggaagttaggtagcattcagatgggtgatcgtgctcagcgaaccaaa
cctccacaaatggaagaacgaaaagcaaaacgtcgcaagcgtgatgaagatgagaaagga
caagctaacttcagaggaagatcgttgttgtcagaaggtgttgatgaaatggttggtgtt
gtttacaaaccaagaacaaaggaaactcgtgaaacttatgaaattcttctgagttttatc
caggctgcactgggagatcaacctcgtgacattttgtgtggagcagctgatgaggtcata
tcagtactaaaaaatgaaaggcatcgcgataaagaaaggagaaaagaaattcagtccttg
cttggaccacttgaagacacaagatatcatgttctggtaaacttggggaagaaaataaca
gattttgggagtgcaaaagatgctgacactgctgatgacaacattgatgaaacatatgga
gtcaatgtccagtttgaatctgatgatgaggcaggggaagatgacacttacggtgaagtt
cgtgaagggtctgatggagaggatgaagagatggaaggtgtggaagctgatgttgacatg
gttgtgtcagcaaatttaacaaatgaagctggagatgtcaacattgccaagaacaaggaa
ttgcatcccagagatattgatgcctactggttacagcgcaacctcagtaaagtttatgat
gatgctatcgtatctcagaagaaagcagaagaagtcttggacatcttaaaaacagcaggc
gatgatttgcaatgtgaaaatcaattggtattactgttaggttttaatcaatttgatttc
atcaagtcagtacgagaacataggcaaatgattttgcattgtacgcttttagcaagtgca
caaagtgatgctgccagacaacaaattgaggaaaaaatgaagcaagatcccatgcttctt
gctattttggagcaactgcatgctactgaaaaggaagacatcattaaagaagaacaagaa
aggagagaaagacttagaaagagtaaggtggatgccgatcttgaagcaacagatgctgat
aatgctaagactgaggaaaattatcaacctagtgctgctgcactggacctggaagaccta
gaattttctcagggctcccattttatggccaacaagaaatgccagttgcctgatggctcc
tacagaaagcaaagaaaaggatatgaagaagtccatgttccagcattaaagcctaagccc
tttgatgacaaagaaaaacttattgccattgatactttgcctaaattttcacaagcagcc
tttgaagggtttaaaacattgaacagagtgcaaagtaaattatgtaagactgccttagaa
agtgatgaaaatgttctcctttgtgccccaactggagcaggtaaaaccaatgttgctctg
ctgtgtatgttgaaagaaattggcaaacacatctgcagtgatggtactattaaactagaa
aactttaaaatcatatatattgcacccatgaagtctttggtacaagaaatggtgggaaac
tttgggaaacggcttgctaactacggtataaaagtcgctgagttgactggagatcatcag
ttatgtaaagaagaaataaccgctacacaggttatcgtttgcacccctgaaaagtgggat
atcataacacgcaaaagtggagagagaacatacactcaattagtaaggcttatcattatg
gatgaaattcatatgcttcatgatagtcgaggtccggtgttagaagccatcgttgcaaga
accatcaggtcaattgaaacaacacaggaagatgtgaggttggttggattgtctgctacc
cttccaaattatgaagatgttgctacttttttaagagttgatcctgcaaagggacttttc
tactttgacaatagcttcagacccgttccactcgaacagcaatatattggcataacagaa
aagaaaccaatgaagcgtttccaggtcatgaatgaaatagtgtatgaaaaggttgttgaa
aatgctggtaagaaccaagtccttgtgtttgttcattcacggaaagaaacagggaaaact
gctcgtgcgattcgtgatatgtgtcttgaaaatgacacacttggtcacttcttgagagaa
ggatctgcatcaactgaagttctgagaacagaagctgagcaagtgaagaacctagagctg
aaagatctacttccatatggatttgccatccatcatgccggaatgacaagagttgatcga
actctggtggaagatttgttttctgaccgtcacattcaggtgttggtgtctacttcaact
ttagcatggggtgtaaatttaccagcacacacagttattatcaaaggtactcaggtttac
agtccagaaaaggggagatgggttgagttgggtgcactggatgttttacaaatgatgggt
cgtgctggccgtccccaatatgacacaaagggagaaggtgttttgatcactgcccacagt
gaactgcagtactacttgtctttgcttaaccaacaactgccggttgaaagtcagatgata
gctaaacttcctgatacactgaatgctgaaatagttcttgggaatgtccaaagtgttaag
gatgctgtcaactggcttggttacacttacctatacattagagctttacggcaaccatct
ctttatggtgttgattccttatcagatgatcctctgttgcaacagagaagggttgattta
gctcatgctgctgcaaatcttttggcaaaaaataacatgataaagtatgacagaaaaaca
ggccagattcaagttacagaccttggtcgaatagcaagtcactattattgtacaaatgaa
agcatggcaacatacaatgaccttttaaaacctacactcagtgagattgagctgttccgt
gtgttttctttgtcatctgagtttaaatatatcacagtccgagaagaagagaagttagag
ctaaacaagctgttggaacgagttcctatccctgtcaaggagagcattgaagagtcatcc
gccaaagtgaatgtgcttctgcaagcatacatttcccagctgaaattggaaggctttgct
ctcatggctgatatggtgtatgtcactcaaagtgcgggtaggttgatgagagcgatcttc
gaaattgttctttacagaggttgggctcagctcgctgataaatgtctgtctctgtgcaag
atgatcaatcgccgaatgtggcaatctatgacaccactgaggcagtttagaaaggttcca
gaagaagttgtgaaaaaaattgagaaaaagaattttccttgggaaaggttctatgatctt
ggtcataatgaaataggagaactcattcgaatgccgaagatgggtaaaggccttcacaag
ctcatccaccaatttcccaaaatggaactatccgttcatgtccagccaatcacccgatcg
acactgcgagttgagctgacaattacaccagactttcagtgggatgagaaggtccacggt
aattctcaagctttttatatatttgtcgaagatgttgacagtgaggttattttgcatcat
gagtactttctgctgaaaagtaaatatgcaactgatgagcatgtggtcaatttctttgtt
cctgtctttgagccacttccacctcagtatttcatcaggatcatctcagatcactggatt
gcatcagaaactcaactccctgtctcttttaggcacctgattttacctgaaaagtatccc
ccacccacagagttgcttgatttgcaaccacttccagtatcggctcttcggaacccagaa
tttgaagccctgtacgaagacagctttccctgcttcaatcccattcaaacacaagtcttc
aatgctatttacaatggtgacgagaatgtttttgttggtgcaccaactggaagtggaaag
acactgtgtgctgaatttgccctattgcatgcctttactcgtgacacagaagctagatgt
gtatatgtaactcctgttgaagctgtggcagagcttatttacaaagactggagagagaaa
tttgaggtccaccttggtaaaaaggtgtctttacttactggtgaaactagcactgatctt
cgattgatctctcgagcctccatcatcattgctacatcagaaagatgggatgtaatttct
cgtcggtggaaacagagaagaaatgtgcacagcgtgtccctttttattgtggatgaaata
catcttctgggaggagagaccggtcctgaagttgaagtggtttgctctcggatgagatac
attgcatcgcagctggagaagaagattcgtatcattgctatggggtcatcactcgccaat
gctcgggatgtggctcagtggttgggttgttctgccatgaacacattcaactttcatcct
aatgtgcgaccagtgccactcgaattgcatattcagggatttaacatcactcacactcag
tccaggttgctcagtatggccaaaccagtatacaatgccatcatgaagcactcgccaaaa
cgtgcctgtattatatttgtcccatcaagaaagcaaagcaagttgactgctgttgatatc
ttgacttatgcagctgcagatggaacaccgcagaggtttttacattgtaacgagtcagag
ctggatgcctatctggaacatgtcaaagatccaacattgaaggaaactttgtctaatggt
gtggcttatctacatgatggcacaactcaacttgaacgtactgtagtggagcagctcttt
tcttcaggtgctgtccagattttagtggcatctcgtagcttatgctggggtcttaacctc
tcaggacacctcgtcatagttatggacacacagcactacaacggcaaaatccatgcatat
gttgattatccaatatatgaagttctgcaaatgattggaagggcaaatcgtcctcttaaa
gatgaagaaggaaaatgtgttgtcatgtgccaaaattccaaaaaagactttttcaaaaaa
tttgtgtatgagcctcttccagtagaatcacatcttgatcattgtctccatgaccatttt
aatgctgaaatagtcaccaagataattgagaataagcaggatgctgttgattatctgact
tggacttttttgtacagacgaatgagtcagaatccaaactactacaacctacagggtgtg
tctcaccgtcatctttcagataacttatcggaacttgtggaaaatacattggcagatttg
gaacagtcaaaatgcatttcaattgaagatgaaatagatatcactcctcttaaccttgca
atgattgctgcatactactacattaattacacaacaattgagctgtttagcatgtcttta
aatgccaagaccaaaatacgaggattgattgaaattatcagtaatgcagctgaatatgag
agtatacccatacgtcgacatgaagacaacactcttaaacaattgttgccaaaagtgcag
tacaaaccccaaaacattcgatacactgatccccatattaaaacaaaccttttactccag
gcacatctttctcgattgcaactacctgctgaattgcaatctgatacggaacaaatttta
ggaaaagcagttcgccttatccaggcatgtgtggatgtcctttcttcaaatggttggctc
tctccagctttggctgcaatggagttggcacaaatggtgactcaagccatgtggagtcgc
gactcatatttaaagcaactaccacattttggatctgatcttattaagaaatgctcagac
aaggaaattgaaagtgtgtttgacatattggagatggaagacaatgatcgggaagacctt
ttgcaaatgtcggaagctcagatggctgatgttgctcgattctgcaatcgttatcctaat
attgaactcagctatgatgtccaggatcctgaaaatctgcatgctggaagcccagttgtt
gtcctggttaccctggagcgtgaagatgaagttgccgggccagtgatcgctccttttttc
ccgcaaaaacgagaagagggttggtgggttgttgttggcgacccaaaaacaaacagtctt
atttcgatcaaacgtctcactctgcaacagaaggctaaggtcaaacttgattttattcca
ccatcggctggttctcattcctacaccctgtacttcatgagtgatgcatacatgggctgt
gatcaggaatataaacttcaaattaatgtccgtgagtctgagggtgaaagcagtggaagt
gagtcagactga
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