Clavelina lepadiformis (light-bulb sea squirt): 143461662
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Entry
143461662 CDS
T11416
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143461662
03016 Transfer RNA biogenesis [BR:
clep03016
]
143461662
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143461662
Spliceosome [BR:
clep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
143461662
Transfer RNA biogenesis [BR:
clep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
143461662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Motif
Other DBs
NCBI-GeneID:
143461662
NCBI-ProteinID:
XP_076815586
LinkDB
All DBs
Position
6:complement(7630222..7641758)
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AA seq
747 aa
AA seq
DB search
MTAFENLGVMPEIGKVVDEIGWQLPTDIQMESIPLILGGGDVLMAAETGSGKTAAFSIPV
IQVVHESYQDSSKSKDGSKKLKVGGGLFSQWQMNPYDRGTAFAIGADGLLCQSREFKDWH
GCRSTRGVTKGKYYYEAHCKDEGLNRVGWSTLSADLNLGTDKQGFGFGGTGKKSNNRQFD
TYGEPFTMHDIIGCFLDMDAGTIRFSKNGKDLGHAFDIPAYIRKEPMFAACVLKNAEIQF
NYGSTPFKHDPSDGYIGLCEAPESCSVGSSIVGSVVAKSRNQTRKDNNAPYAIVIEPSRE
LAEQTCNIIRKLKQYIDKPKLNEVLVVGGISPADQLKQIERGIDILIGTPGRVDDFISTG
KVNLSQVRFLILDECDGLLTAGNGDFIKRVHSKIPQVTGDGKRLQVIVCSATLHSFDVKK
LAEKIMHFPIWVDLKGEDSVPETVHHVVVPVDPIKDPSWMGLKQHIKTDGVHQRDDVGSR
ARETAEKWSEGVKVLKGEYCLKAIRQHKMDQAIIFCRTKLDCDNMETYFKQQGGGPDKPG
HQFSCVCLHSDRKPPERRSNLEKFKKNQVRHLICTDVAARGIDISGVPFVINVTLPDDKQ
NYVHRIGRVGRAERMGLAISLVATKHKEKVWYHSNCNSRGRGCYNTDLTDRGGCCIWYNE
GGLLGEIEEHLKITVEQTSTKMEIPVDEFDGKVVYGSKRGNTGVSLYKGHADVLAPTVQE
LQDLEKSAQTSFLNLTMKTSSILDGRA
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttgagaatcttggtgtgatgccagagattgggaaagtagttgacgaaatc
ggttggcagctaccaacagacatacagatggaatccattccgctcatacttggaggtggt
gatgttcttatggctgctgaaacaggatcagggaaaaccgctgcatttagtattccagtg
atacaagttgtacatgaatcatatcaagattctagtaaaagtaaagatggctccaaaaag
cttaaagtcggtggtggattatttagtcagtggcaaatgaacccatatgacaggggcaca
gcatttgctattggagctgatgggttactatgtcagtccagggaattcaaggactggcat
gggtgcagatccactagaggtgttactaaaggaaaatattactacgaggcacactgtaaa
gatgagggtttgaatcgagttggttggtctacgctttctgcggatttaaatcttggtact
gacaagcaaggctttgggtttggtggcactggcaaaaagtctaataatcgtcaattcgac
acctatggtgaaccatttacaatgcatgatataattggatgttttcttgatatggatgca
ggtactataagattttcaaagaatggaaaagatcttggtcatgcatttgacattcctgca
tacatccgaaaagagccaatgtttgcggcttgtgttctcaaaaatgctgaaattcagttc
aattatggcagtacaccatttaagcatgatcccagtgatggctatattggactttgtgaa
gctcctgagagttgttctgttggaagcagcatcgttggatctgttgtggctaagagtcgg
aaccaaaccagaaaagacaataatgcgccttatgctattgtaattgaaccatctcgggaa
cttgctgagcaaacgtgcaatattattcgaaagttgaaacaatatattgataaaccaaag
ttaaatgaagttcttgttgttggcggaatttctcctgcagaccagttgaagcagattgag
cgaggaattgatatattgataggaacaccgggacgagtggacgatttcatatctactgga
aaggttaatctcagccaagttaggtttttgattttggatgaatgtgatggcttgcttacc
gctggaaatggagatttcataaaaagggtgcactctaaaattccacaggtaactggtgat
ggtaagagacttcaagtaattgtttgttcggcgactttgcatagttttgatgtcaaaaag
cttgctgagaagattatgcacttcccaatttgggttgacctcaagggcgaggattctgta
cctgaaactgttcaccatgtcgttgtacctgttgacccaattaaagacccaagttggatg
ggtttaaaacagcacatcaaaactgatggagtccatcaaagagatgatgttggcagtcgt
gcaagagaaactgctgagaagtggtctgaaggagttaaagtattgaaaggagaatactgt
ttgaaagcaatacgtcaacataaaatggaccaggcgatcattttttgtagaactaaactt
gactgtgacaatatggaaacgtactttaaacagcagggaggtgggccagataagccaggc
catcaattctcttgtgtttgtcttcatagcgatagaaaacctccagagcgtaggagcaat
ttggagaaattcaagaaaaatcaggttcgtcatttaatttgcacggatgttgctgcgaga
ggtattgacattagtggcgtaccatttgtcatcaacgtcacgttacctgacgacaaacag
aattatgtccacagaataggaagagttggtagagctgaaagaatgggacttgcaatatcg
cttgttgccaccaaacacaaagaaaaggtttggtatcacagtaattgtaacagtagagga
cgtggttgctacaacaccgacctaacagatcgaggaggctgctgcatttggtataatgaa
ggaggcttgcttggtgaaattgaagagcatttgaagattacagttgaacaaactagcaca
aaaatggaaatacctgttgatgaattcgacggaaaggtggtgtatggtagcaagcgtgga
aataccggggtcagtttatacaagggtcatgcggatgttttagctcctacagtgcaggag
ctgcaagacttggaaaaatctgcgcaaacttcttttcttaatctcaccatgaaaacttct
tcaatattggatggaagggcgtga
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