Clavelina lepadiformis (light-bulb sea squirt): 143462265
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Entry
143462265 CDS
T11416
Name
(RefSeq) structural maintenance of chromosomes protein 5-like
KO
K22803
structural maintenance of chromosomes protein 5
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clep03400
]
143462265
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
143462265
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
AAA_29
DUF948
SMC_hinge
AAA_27
2-thiour_desulf
ABC_tran
Motif
Other DBs
NCBI-GeneID:
143462265
NCBI-ProteinID:
XP_076816466
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All DBs
Position
6:15817172..15832840
Genome browser
AA seq
1073 aa
AA seq
DB search
MDDEQSAVQSNATTTIRRKKNEGFVKGSIIRIALQNFLTYDHCSFRLNPKLNVIIGPNGT
GKSSIVCAICLGLGGKTGVLARAKELVDYIKHGCDKAIIEIELCSPPNNYVIRREISQSS
NGKATSIWVVNGNQVSVKQVEETVSKLNIKLANLCQFLPQERVADFAKMNKIELLENTEL
AICPLQMQEDHKWLKDFCNMEKILVINKNEKQSHLDKLVQKNQRVEKEALRFQERQKLIS
ALEVVDQKRAWTIYSEARGEYYKHRDAFQHLKKKYSEAQQKTNPLEKEKDKLTNHMVDID
KNLKKKSEELKAVAAAAKQIHDKINEMDDKAQEKWDDYKEREKDEQMRLKKVEQFKLQIS
GWQKELEQLEEKNLQSEIDELSSKIRATLTEITHLEHEHAKISEEKRKTHEHIKTCEQKN
AELNNLSKKRLEILRRRNKDCYNAIQWLRSNKSKFKSTVHEPIMLLIKMKNPSHAELIES
HISMRDMFAFVCENSDDNKKFIEEVREKQRLRINVVKAPRSNNGDLLKPSSFKPRTNLES
LKKWGFTSYLRESFDAPEAVMAFLCKQYRVYDLPIGSAATKSVVDQVTQQSGLTLFYIPT
LSSESPGCKYSVRRSKYSSNSIVGNSSLRKAEYLNINMDPFELEQIKQQTQKHIEKLAYC
AERNNELMTDRRRLEKQDNELKTQKKEILQQKNMRKNLENKIMLKQKNLEDLEKNTMNLE
ILKAKTQKSVHEVTLKKKDFAVKFVHKIKACVDASITKGMTQAEYAHCLRKKTTAEEKIH
QMKLENVELQKAAERAEMAKNEAQKRAKDLLAAAKKKTGGIVDEELRNKFNNLPNDLAEI
EAKIYEYQARLDCCGETDPKAFDEFEARKKEIKFLESEVTHMLSHLQNKRDEMDKVKKRW
LTPLREIISKINSRFSQYFAQMGCAGEVDLHAENEDDFGKYGIRIRVKFRSSSSLQELNP
FRQSGGERSVSTMLYLVALQSMHTCPFRLVDEINQGMDPNNERRVFEVIVRSSSEESTSQ
YFLITPKLLPNLTYNRHMSVHCVYNGPKMLPHNAWKVSRFIRRRRMLQYEDDD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgagcaatctgctgtgcaatcaaatgcaacaacaacaataaggagaaagaag
aacgaaggatttgtgaagggatctataattaggattgctctgcaaaactttctaacttat
gaccattgctcatttcgtcttaatcctaaactaaatgtcattatcggtcctaatggcaca
ggaaaatcaagcatcgtatgtgctatatgccttggtcttggtggtaaaacaggtgtcctt
gctcgtgcgaaggagcttgtggattacatcaaacatggctgcgacaaagctataattgaa
atagagttgtgtagcccacccaataattatgtaattcgaagagaaatcagccaatcgagc
aatggaaaagcgacttctatttgggttgtcaatggcaaccaggtaagtgtgaagcaagtt
gaagaaacagtatccaaattaaacataaaattggccaatctttgtcaattccttcctcaa
gaacgtgtcgctgactttgcaaaaatgaacaaaatagagcttttggaaaatacagagtta
gcgatatgtcctttgcaaatgcaagaagaccacaagtggctaaaggatttttgcaatatg
gaaaagattcttgttataaataaaaatgaaaagcaatctcacctcgataaacttgtgcag
aaaaaccaacgcgtagaaaaagaagcactaagatttcaggaaagacagaaactcataagc
gctttggaggtcgtagatcaaaagcgggcatggactatatacagcgaggcacggggtgaa
tattacaagcacagagatgcttttcaacacctgaagaaaaaatattcagaggcacaacaa
aaaacaaacccattggaaaaagaaaaagacaaacttactaatcatatggttgacattgac
aaaaacctaaagaaaaaaagtgaagaactgaaagcagtggctgctgctgcaaaacaaatt
catgacaaaataaatgagatggatgacaaagcccaagaaaaatgggatgactataaagag
cgggaaaaagatgaacagatgcgactgaaaaaggttgaacagtttaagcttcaaatatcc
ggctggcagaaggagttggaacagcttgaggagaaaaatctgcaatcagaaatcgatgag
ctcagctcaaaaatccgtgcaactttaactgagatcacacacctcgaacatgagcatgcc
aagatctcagaagaaaaacgaaaaacacatgaacatattaaaacttgtgaacagaagaat
gcagagttaaacaacttgagcaagaaacgtcttgaaattcttcgccgtcgtaataaagat
tgttacaacgccatccagtggttaaggtcaaataaatcaaaattcaagtctaccgttcat
gagccgattatgctgctgattaaaatgaagaaccccagccatgcagagctgattgaaagc
cacatatcgatgagagatatgtttgcctttgtttgtgagaacagcgatgataacaagaaa
tttattgaggaagttcgtgaaaagcaacgtttgaggattaacgtggttaaagcaccacgt
tccaacaatggagatctccttaagccatcatcgtttaaacctcgcacaaaccttgaaagt
ttgaaaaaatggggcttcacgtcatacttacgagaatctttcgatgctccagaggctgtg
atggcatttctatgtaaacaatacagagtatatgaccttcccattggttctgccgccaca
aagtcggttgtagatcaggttactcagcaaagtggactgactttgttttacattccgacc
ttatcttctgagtcacctggctgtaaatattctgtacgaaggtcgaaatacagctccaac
tccatcgtaggaaacagttcattaagaaaagcagaatacttgaacatcaacatggaccca
tttgaactggagcaaattaaacaacaaactcaaaaacatattgagaagcttgcttactgc
gcagagcgcaataatgagctcatgactgacaggagacgccttgaaaagcaggacaacgaa
ttaaaaactcaaaagaaagagattctgcagcagaaaaacatgaggaaaaatctcgaaaat
aaaatcatgttaaagcagaaaaatttggaagatcttgaaaagaacaccatgaacctggaa
attctgaaggcgaaaacacaaaaatctgtccatgaagttactttaaaaaagaaagatttt
gcagttaaatttgtgcataagattaaggcttgtgttgacgccagcatcaccaaaggcatg
acacaagctgagtatgctcactgcttgagaaagaagacaacggcagaggaaaaaattcat
caaatgaagcttgaaaatgttgaacttcaaaaggcagctgagagggctgaaatggcaaaa
aatgaagcgcaaaaaagggcaaaagatcttcttgcagctgctaaaaagaaaactggtgga
atagtggatgaagaactacgaaataaatttaataacctgccaaatgacttggcggaaatt
gaagcaaagatttacgaatatcaagccaggctggactgttgtggagaaaccgatcccaag
gcttttgacgaatttgaagccaggaaaaaagaaataaaatttcttgaatctgaagtgaca
cacatgcttagtcatctacaaaacaagcgtgacgaaatggacaaagtcaaaaagcgatgg
ttgactccactacgagaaataatttcaaagatcaactctcgcttctcacaatactttgct
cagatgggatgtgcaggagaggttgatcttcatgcagagaatgaggacgattttggtaaa
tacggaatcagaattcgagtcaaatttcgctcttcgtcctccttgcaagagctcaatcca
tttcggcagagtggaggcgaacggagcgtctccacaatgctctatctcgtcgccctacaa
agcatgcatacttgcccatttcgtcttgtagatgagatcaaccagggcatggaccccaac
aatgaacgtcgagtttttgaagtcatcgtgagatcttcttcggaagaatcgacttcccaa
tactttttgataacgcccaagctcttgccaaacttgacatacaaccggcacatgagcgta
cattgcgtgtacaatggtccgaagatgctgcctcacaatgcgtggaaagtgtcacgtttc
atcaggagaagaaggatgctccagtacgaagatgacgactaa
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