Clavelina lepadiformis (light-bulb sea squirt): 143462679
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Entry
143462679 CDS
T11416
Name
(RefSeq) uncharacterized protein LOC143462679
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143462679
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143462679
Spliceosome [BR:
clep03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
143462679
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Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
143462679
NCBI-ProteinID:
XP_076817037
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Position
6:complement(3944256..3950953)
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AA seq
939 aa
AA seq
DB search
MWNNNNDQIAHSFQTKERTDDVRISENVTFSELLLSDNVLSGLTKSGFYKPSPIQLKAIP
LGRCGLDLVVQAKSGTGKTCVFSVIALENTETGSPLLQVLILAPTREIALQIHGVISSIG
QDIEGLSVQVFIGGTKLSEDKIKAKRCHIAIGSPGRLMQLIDLGVFVTTNVRLFVLDEAD
KLVEEGSFQSQINWIFSSLPANKQMIALSATYPELLAEFLTRYMREPTFVRLDPSQPSLL
GLKQFYLVTKPCSLPYIMFEEKTQHVIDILSSVSFQQALIFSNYHSRAETICNALNHAGW
PSTFISSTLDQSQRIEAIGKLKQFKCRVLISTDLTSRGIDAQNVDMVINMDIPNDWETYM
HRIGRAGRFGSRGIAVSVVGPGAEEVKLHSIAAKCNASISALHDVRTLKELKTMPALQVP
SDLTTNLSGDRVSEKEQSFDTCASTNGSTSVGVKIRTESWDQLDKDGSLNQHFLTSDNNS
SSLLPNDMHSIDDNKDAELNASPDIPLCSDENVGASSTTEPLQKCFPPNVNFEETVSKVP
IESMSALDKNQTSSSHSSGTTSSEIPLVPSLMELQIQSQGLRKNIHYLFMNYEELKADFD
FHVRTGKFSDAPTFAKVSADKYFENAKSELNKQMEQLNIAAKSEATKSNKTICQETSILP
ESTDTDKNFQKLDDSSHITGLAGSVTNVRQNSDITNEKLTASSSKTQKSAQGTKVVNALS
KKYPMSAAAGLKQVKHWVTNVEQKIPITMESNTLIQTEKFSMDNCDNKPVENIFIRDFER
RKSSSDVHPYPSSRVPQPVKKKGVGFEFQMEQNEVESEESEELGTDSNDVDEERSSSYEE
ESTSSDNSMVDSDECKNETQLPPFAPHLWFPPHCPYPPHYAPYYPSPYPMPAPLTYPSFP
SFAPPSFYPWASPSYNEATFSSNLYHWALQHARYQVYNS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtggaataataataatgatcagattgctcactcatttcaaaccaaagaacgaactgat
gacgtgcgaatttccgaaaatgttactttttccgaacttcttctttctgacaatgtgctg
tccggcttaacaaaatctggattttacaaaccatctcctattcagctgaaagctattccg
ttgggaagatgtggacttgatttggttgtacaagccaaatcaggaacaggaaaaacttgt
gttttctctgtaattgctttagaaaacactgaaacaggatcacccttgcttcaggtgttg
atattagcacctacaagagaaattgctctgcaaatccatggtgtaatttcatcgatcggc
caagacattgaagggctgagtgtccaagtttttattggtggtactaaactgagtgaagat
aagatcaaagcaaagagatgtcacatcgctattgggtctcctggccgactaatgcaactc
attgaccttggtgtgttcgtcaccacaaatgttagactttttgttctggatgaagcagat
aaactagttgaggaaggaagttttcaatcacaaatcaactggattttttcatcattgcct
gcaaacaaacaaatgattgcattatctgccacgtatcctgagctcttggcagagtttttg
acaaggtacatgagagaaccaacttttgtccgtcttgatccttcacagccctcattatta
ggtttaaaacagttttacctggtgactaaaccttgtagccttccctatatcatgtttgaa
gaaaaaacacaacacgtcattgacattttaagcagtgtttcctttcagcaagcgctcata
ttttctaattatcactctcgtgccgagacaatatgcaatgcgttgaatcatgccggctgg
ccgagcacttttatttctagtaccttggatcaatcacagcgtattgaagctatcggtaaa
cttaaacagtttaagtgcagagtgcttatatcaactgatttgacttcacgtgggattgat
gcccaaaatgtggacatggttatcaatatggacattccaaatgactgggaaacttacatg
cacagaattggaagagctggcaggtttgggtcacgtggcattgcggtgtctgtagtaggt
cctggagcagaagaagtcaagcttcactctatagcagcaaaatgtaacgcttcaatatct
gcacttcatgacgtcagaacccttaaagagttgaagactatgccagcattgcaggttccc
agtgatttaaccacaaatctttctggtgatcgtgtgagtgaaaaagaacagtcctttgac
acatgtgcctcgaccaacggaagtacatctgtgggtgtgaaaatccgtactgaatcctgg
gaccaactggataaggatggatctttaaatcagcactttttgacttcagataacaacagt
tcgtcattattgcccaatgatatgcattcaatagatgataataaagatgctgaactaaat
gcctcacctgacatcccgctttgttctgacgaaaatgttggagcaagttcgacgactgaa
ccgttacaaaaatgctttcctccaaatgtgaattttgaggaaactgtgagcaaggttccc
attgaaagtatgtctgctttggataaaaaccaaaccagttcatctcattcgtctgggacc
acttcatctgaaattccgctggtgccaagccttatggaacttcagatccaaagtcaagga
ctacgcaaaaatatccactacttgttcatgaattacgaagaactgaaggctgattttgat
ttccatgttcgcacaggtaaattttctgatgctcctacatttgcaaaagtctcagctgac
aagtattttgaaaacgccaaaagtgaactcaataaacaaatggaacagctgaacattgca
gcaaagtcggaagcaacaaaaagcaataaaactatttgccaggagacaagtattctgcca
gaatctacagatacagataaaaatttccaaaaattggacgactcatcacatataactggc
ttggctggttccgtgacaaatgttaggcaaaatagtgacataactaatgaaaaactgact
gcttcctcaagcaaaacccaaaagtctgctcaaggtaccaaagttgtaaatgctctaagt
aaaaagtaccctatgtcagctgctgctggattaaaacaagttaagcattgggtgactaat
gtggagcagaaaattccaatcacaatggaaagcaacaccttgattcaaactgaaaaattt
tccatggataattgcgataataaaccggttgaaaatattttcataagggattttgaaaga
cgtaaatcttcatctgacgttcatccgtatccttcatcacgtgtcccccaacctgtaaag
aaaaaaggggttggttttgagtttcaaatggagcaaaacgaagttgagagtgaggaaagt
gaagaattaggtacggattctaatgatgttgatgaagagaggagtagttcatacgaggag
gaatcaacatcatcagataactcaatggtcgacagtgatgaatgcaagaacgaaactcaa
ctgcctccttttgcaccacatctttggtttccgcctcattgcccatatccaccccattac
gcaccttactacccgtccccataccccatgcctgctccactcacgtacccatcatttcct
tctttcgccccaccttcgttttacccatgggcttcacccagttataatgaagccaccttt
tcatccaatttataccattgggctttacaacatgctcgctatcaagtctacaatagttaa
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