Clavelina lepadiformis (light-bulb sea squirt): 143463213
Help
Entry
143463213 CDS
T11416
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143463213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143463213
Spliceosome [BR:
clep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
143463213
Complex C
U5 SnRNP specific factors
143463213
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
143463213
NCBI-ProteinID:
XP_076817746
LinkDB
All DBs
Position
6:17947802..17965113
Genome browser
AA seq
2350 aa
AA seq
DB search
MENSMEVSYGFPPPGLMPPPPVPPEMEPSNPLPSGGLTEEMLQEKARKWQQLQNKRYAEK
RKFGFVDPQKEDMPPEHVRKIIKNHGDMTNRKFRHDKRVYLGALKYMPHAMLKLMENMPM
PWEQIRDVPVIYHITGAITFVNEIPWVIEPAYIAQWGTMWIMMRREKRDRRHFKRMRFPP
FDDEEPPLDYADNVLDVEPLEPIQMELDPEEDAAVSEWFYDNRPLQDNPKYVNGSTYRKW
HLSLPQMSALYRMANQLITDLVDDNYFYLFDLKAFFTSKALNQAIPGGPKFEPLVRDNTL
QDEDWNEFNDINKIIIRHQIRTEYKIAFPYLYNDLPKFVHLAWYHTPNVVFIKTEDPDLP
AFYFDPIINPISHRHSVKTAEVELDEEVEGFQLPEYIQPLLQETPLYSDNTANGIALLWA
PRPFNLRSSRTRRAVDVPLVKTWYREHCPAGQPVKVRVSYQKLLKCYVLNALKQRPPKPQ
KKRYLFRSFKATKFFQSTKLDWVEVGLQVTRQGYNMLNLLIHRKNLNYLHLDYNFNLKPV
KTLTTKERKKSRFGNAFHLCREILRLTKLTVDSHVQYRLGNVDAFQLADGMQYVFAHVGQ
LTGMYRYKYKLMRQIRMCKDLKHIIYYRFNTGPVGKGPGCGIWAPGWRVWIFFMRGITPL
LERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDIIDMMPEGIKQNKAR
TILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATV
DKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPF
PPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLVEQAYDNPHEALSRIKRHLLT
QRAFKECGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYESDKRRLFPAWIKPADTEP
PPLLVYKWCQGINNLQEVWETGEGECNVMMETRFEKLYEKIDLTLLNRLLRLIVDHNIAD
YMTAKNNIVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLQRASEMAGPPQM
PNDFLSYQNVATESNHPIRLYSRYIDKIHLFFRFSAEEARDLIQRYLTEHPDPNNENIVG
YNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTTEWESSFVSVYSKDNPNLLF
NMSGFECRILPKCRTTFDEFTHKDGVWNLQNEITKERTAQCFLRVDNESLQRFHNRVRQI
LMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKM
PSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPN
LYRYVMPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDR
HTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEH
TLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANV
YVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVFDQELDALEVE
TVQKETIHPRKSYKMNSSCADILLFAAYKWNVSRPSLLADSKDTMDSTSTQKFWFDVQLR
WGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGCKPLIQ
QAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYR
VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAA
LIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKLGDLIL
KASEPQMVLFNLYDDWLKSISSYTAFSRLILILRALHVNPDRSKVIMKPDKTTITEAHHM
WPSLGFDEWIKVEVALKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIA
EIEKQTKEQSQLTATQTRTVNKHGDEIITATTSNYETQTFSSKTEWRVRAISATNLYLRT
NHIYVSSDDIRETGFTYILPKNILKKFICISDLRAQISGYLYGVSPPDNPQVKEIRCVVM
VPQWGTHQTVHLPNQLPQHEYLKELEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPVWD
GEKTIIITCSFTPGSCSLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRF
LGFFMVPLQGSWNYNFMGVRHDANMKFDLQLANPKEFYHEVHRPSHFLNFASLEDGGWAT
LMADREDHYG
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcatggaagtttcttatggattcccacctccagggttgatgcctccccct
ccagtccctccagagatggagccatccaatccccttccatctggaggattaactgaggaa
atgttgcaggaaaaagctagaaagtggcaacaactccagaacaagagatatgctgagaaa
cgaaaatttggatttgtcgacccccaaaaagaggacatgccccccgaacatgttcgaaaa
attataaaaaaccacggagatatgacaaatcgaaagtttcgtcacgacaagcgggtttat
cttggggcgttgaagtacatgccccatgcaatgttaaaactgatggaaaatatgccaatg
ccgtgggaacaaattcgtgatgttccagtcatttatcacataacaggcgcaattactttt
gtgaatgaaataccgtgggttattgaaccagcttacattgcacaatggggaacgatgtgg
attatgatgcgtcgagagaagagagatcgtcgtcatttcaagaggatgagatttcccccg
tttgatgacgaggaaccaccgttggattacgctgataatgttctcgatgttgaacctctt
gaaccgattcaaatggagcttgatccggaggaggatgccgcagtctctgaatggttttat
gacaaccgaccattgcaggataatccgaagtatgtgaatggctcaacctatcgcaaatgg
cacctgtcgctgccacagatgtcagcgctgtatcgaatggcaaaccagctcattaccgac
ttggtcgacgacaattatttctatctatttgacctgaaagccttttttacttccaaagca
ttgaatcaagccatccctggtggacctaaatttgaaccacttgttcgtgataacacattg
caggacgaagattggaatgaattcaatgacatcaacaaaatcatcatccgtcaccaaatc
agaactgaatataagatcgcttttccatacctgtacaacgatttgccgaagtttgtgcat
ctggcatggtaccacactccgaatgttgtcttcatcaagaccgaagaccctgatctacct
gctttttactttgatcctatcatcaatcccatttcccaccgacattctgttaaaactgca
gaggtagagctggatgaggaagtggaaggatttcaactgccagaatacattcaacctctc
ctgcaagagacgcccctgtacagtgacaacacggccaatggcatcgcgcttttgtgggca
ccgcgaccttttaacctaaggtcatctcggacacgtagagctgtggatgttcctttggtg
aaaacatggtatcgagagcattgcccagctggacaaccagtcaaagtccgagtgtcctac
cagaaactgctcaagtgttacgtactaaacgcactcaaacaacgaccacctaaaccacaa
aagaaaagatatttgttccgatctttcaaggcgactaaatttttccagtcaacaaaactg
gactgggttgaagttggacttcaagtaacaagacagggttacaacatgttgaacttactg
atccatcgaaagaatctcaactaccttcatctggattataacttcaacttgaaaccagtc
aaaacgctgaccaccaaggaacgtaagaaatcaagattcggaaacgctttccatctttgc
cgtgagattttgaggctgaccaagctcactgtggacagtcatgtacagtacagacttgga
aatgttgatgcatttcagttggcagatggcatgcagtatgtatttgcccatgttggacaa
cttacaggcatgtacaggtacaagtacaagttgatgaggcaaatcaggatgtgcaaagat
cttaaacacatcatctactaccgctttaacacaggaccagttggcaaaggtccgggttgc
gggatctgggccccaggctggagggtttggatcttcttcatgaggggaatcacccctctt
ttggagcgttggcttggcaacttgctggctcgacagtttgaaggccgtcactccaagggt
gttgccaaaaccgtgacaaaacaaagggtggagtcgcactttgaccttgagctgcgagca
tcagtgatgcacgacatcatcgatatgatgccagaaggaatcaagcagaacaaagcccga
acaattcttcagcatctcagtgaagcgtggagatgctggaaggcaaatattccttggaag
gttccaggcttgcctactccgatagaaaacatgattcttcgttacgtgaaagcgaaagct
gattggtggacaaacaccgcacattacaaccgggaacgaatcagaagaggggcaacagta
gataagactgtgtgcaaaaagaatcttggtcgattgactcggctgtacttgaaagctgaa
caagaacgacagcataactatttgaaggatggtccgtacatcacagcagaagaagctgtg
gccatttatacaacgaccgtgcactggcttgaaagtcgccgtttttcaccaatcccattc
ccaccgctgagttacaagcatgacacaaaactgctcatacttgctcttgaaagactgaag
gaagcatacagtgtgaagagtcgccttaaccaatcacagcgcgaggaattgggtctggtg
gaacaagcgtacgacaaccctcacgaagctttgtccagaataaagcgtcatttgctgacc
cagagagcattcaaagagtgtggaattgaattcatggatctctacagccaccttgtgcct
gtttacgatgttgaacctctggaaaaaatcaccgatgcatatctcgaccagtatttgtgg
tacgagtcagataaacgtcgtttgttcccagcttggatcaaacctgctgacacagaacca
cctccactgctcgtgtataaatggtgccaaggtatcaacaatctgcaagaggtgtgggag
acaggggaaggcgagtgcaatgttatgatggaaacaagatttgagaaactttacgaaaag
attgatctcactctgctcaacagattgttgagattgatcgttgatcacaacattgctgat
tacatgaccgccaaaaacaacattgtcatcaattacaaggacatgaaccacaccaactct
tacggaataattcgtggtctacaatttgcatcgtttattgtgcagtattatggtctagta
cttgatctactcgtccttggtttgcagcgtgcaagtgaaatggccggaccaccacagatg
ccgaatgatttcctgtcataccaaaacgttgccacagaatcgaatcatcccattagactc
tactcaagatacattgacaaaatccacttgtttttcaggttcagtgcagaggaagcaaga
gacttgatccagagatacttgaccgaacatcccgatcccaacaacgagaacatagttggg
tacaacaacaagaaatgctggcctcgagatgctcgcatgagactcatgaaacacgacgtc
aacttggggcgtgctgttttctgggacatcaagaatcgcttgccacgatccgtgaccaca
acagaatgggagagctcatttgtgtctgtctacagcaaagataatcccaaccttcttttc
aacatgagcggctttgagtgcagaatactgccgaaatgcaggaccactttcgatgaattt
acacacaaggatggagtttggaatcttcaaaacgaaataacaaaggagagaactgctcaa
tgcttcctccgtgtggacaacgagtccttgcaaagatttcacaatcgtgtccggcagata
ctgatggcatctggatccaccacatttacaaagatcgtaaacaaatggaacacggctttg
attgggttgatgacatactttagagaagcagttgtgaatacacaggaacttctcgatctc
ctcgtcaagtgcgagaacaagatccagactcgaatcaaaatcggactcaactcgaaaatg
ccgagtagatttcctccagtggtcttctatactcccaaggaactgggaggtctagggatg
ctctctatgggtcatgttttaatcccacaatctgatttgaggtggtcaaagcagacggat
gttgggatcactcacttccgatccgggatgagtcacgatgaagatcagttgattccgaac
ttataccgctacgtcatgccgtgggagagcgaattcattgattctcagcgcgtgtgggcc
gaatacgctctcaagcgccaagaagcgaacgcacagaacaggcggttgacccttgaagat
ctggaagattcttgggacaggggaattcccaggatcaacacactcttccaaaaagacagg
catactttggcttacgacaaaggctggagggtcaggactgacttcaaacaataccaggtt
ctgaagcaaaatccattctggtggactcaccagcgccacgacggcaagttgtggaatttg
aacaactatcgaaccgacatgatccaagcacttggtggcgtggaagggatactggaacac
acacttttcaagggcacctactttcccacatgggagggtttgttctgggagaaagcgagc
ggttttgaggagtcgatgaagtacaagaaactgaccaatgcccagcgatcaggtctcaac
caaattccaaatcgtcgtttcactctgtggtggtcacctaccattaacagagccaatgtg
tatgttggtttccaagtccagttggatttgaccggtatcttcatgcacgggaagatcccg
actctcaagatttcactcatccagatcttccgcgcccacttgtggcagaaagtacacgag
agcgtggtcatggatttgtgccaggtttttgaccaagaattggatgctcttgaagttgaa
accgtgcaaaaggaaacaatccatccaagaaaatcgtacaaaatgaacagttcatgtgct
gatatactgctctttgctgcctacaagtggaatgtttctcgcccgtctcttctagctgat
tcaaaagacacaatggacagtacgtccacccagaagttctggtttgacgtccagttacgt
tggggggattacgacagccacgatgtggagaggtacgcccgtgccaaattcctcgactat
acgaccgacaacatgagtatttacccgtcccccaccggtgtattgatagctatcgatctt
gcttataacctgcacagcgcttacggaaactggtttcctggctgcaaaccactgatacaa
caagccatggcgaagatcatgaaggccaaccctgccttgtacgtgttacgagaacgaata
agaaaaggcttgcagctgtacagcagtgaacccacagagccgtacctttcatcgcaaaat
tatggagaattgttcagcaaccaaattatctggtttgttgatgatacgaatgtctacaga
gtgaccattcacaagacgtttgagggaaacttgaccacaaagccgataaatggagcgatc
ttcattttcaatcctcgcaccggacagcttttcctcaagatcatccacacatcggtctgg
gctggacagaagcgtctgggacagctggcgaaatggaagaccgctgaggaagttgctgct
ttgatccgatcacttccagttgaagaacagccgaagcagatcatcgtgaccaggaagggg
atgttggatccactcgaagtccatcttctcgacttcccaaacatcgtcatcaagggaagt
gaactacaattgccgttccaagcttgtctgaaggttgaaaagttgggtgacttgattctg
aaggcatcagaaccacagatggtcttgttcaatctctacgacgactggctcaagtctatt
tcatcttacactgcattctctcgacttatcctcatcctacgcgccctgcacgtcaatccg
gatcgtagtaaggtgataatgaaaccggacaagacgaccatcacggaggcgcatcacatg
tggccgtccctcggattcgacgagtggattaaggttgaggttgctctcaaggatctcatt
cttgctgattacgggaagaagaacaatgtgaacgtggcatccctgacacagtcagagatc
cgtgacatcatcctcggaatggagattagcgcaccttctcaacaacgacaacaaatcgcc
gaaattgaaaaacaaacgaaggaacaatcacaactcaccgccacccagaccaggaccgtg
aacaagcacggagatgagatcatcacagccacaacatcgaactatgagacacagactttt
tcctcgaagaccgagtggcgagttcgtgcaatatccgccaccaacttgtatctgagaacc
aatcatatctacgtgtcatctgatgacatcagagagaccggcttcacttatatcctgccc
aagaatattctcaagaagttcatctgcatctcggatctacgtgctcagatttccggctac
ctttatggggtaagcccccccgacaacccccaggttaaggagattcgatgtgttgtcatg
gtcccacagtggggtacgcatcaaactgttcatttacccaatcaacttccccaacacgag
tacctgaaggagcttgaacccttgggttggatccacacccaaccaaacgagtcaccccaa
ctctcaccccaagatgttacgacccacgcaaagatcatggccgacaaccccgtgtgggat
ggtgagaagacgatcatcatcacttgcagtttcactcccggttcatgttcattgaccgca
tataaactcaccccaagtgggtacgaatggggtcgtcaaaacactgacaagggcaacaat
cccaaggggtacctgccctcccactacgagagggttcagatgttgctctccgataggttt
ctggggttcttcatggtccctctgcaagggtcctggaactacaattttatgggtgttcgt
cacgacgccaatatgaagtttgatctgcagctggctaaccccaaggagttttaccacgag
gtccatcgtccatctcacttccttaactttgcttccttggaggatggcggctgggcgacg
ttgatggcggatcgtgaggaccattacggttga
DBGET
integrated database retrieval system
