Clavelina lepadiformis (light-bulb sea squirt): 143464980
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Entry
143464980 CDS
T11416
Name
(RefSeq) DNA excision repair protein ERCC-6-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
143464980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clep03036
]
143464980
03400 DNA repair and recombination proteins [BR:
clep03400
]
143464980
Chromosome and associated proteins [BR:
clep03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
143464980
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
143464980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
AAA_14
DUF2203
Motif
Other DBs
NCBI-GeneID:
143464980
NCBI-ProteinID:
XP_076819187
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Position
7:complement(11406583..11414573)
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AA seq
1320 aa
AA seq
DB search
MDSVECESDPDVVSHQDSELELIPGVDIYDANILQKGIVEKFNKAFLEKQAHDLLKKIES
IKRDIRNINILLEQTEKQRSHISSKNYSEVSLLKLKSLNSQIQKYQQRLRSLSTNLDKTQ
FSLHLLNDEANKNLKEKTEANNVLSNQEITRTSTASVLDIDFSSAKTLKERKVLIKRGLA
TPTPLAVPAKKLKTTKPAIKLDGTFGDSLFSNDTDNLQKKSKQPEKPLKNNEQSSPIKKK
QKEKLSASDNLCLSPTKASNVKKETKESKKDEDDYVPSDDYGECDDVELEEELDQKLPCR
RRVIVDDANPKNHQKRLAHYKKQLLKDMQEGYEEPEDKILPGGLKVPGRIWQRLYKYQKT
GVKWLWELHTQQTGGILGDEMGLGKTIQVIAFLAALQKSKVHDYDASYNYHGLGPVLIVA
PATVMHQWVRELHSWAPSLRVAILHNSGTHKGSQSALIDNMTLSRGILVTSYERVRLALE
NLLSKSWHYVILDEGHKIRNPEATITHSVKMFATPHRIILSGSPIQNHLRELWSLFDFVF
PGKLGTLQVFMEQFSVPIIQGGYANASEIQVQTAYKCACMLRNTIAPYLLRRLKQDVQSH
IKLPEKRDQVLFCSLTDQQVEVYQNYLNSDSVESILRGSLKIFVGLIHLRKICNHPDLYT
GGHKLLAGEEIPGPDDEKRFGHWKRSGKMIVVESLLRIWKKQKKKVLLFTQSKMMLDVLE
DFIKSQNYTYLTMHGGSAISSRQPMINKFNSDPNIFVFILTTRVGGLGVNLIGADRVILY
DPDWNPSTDSQAQERAWRIGQKKQVTIYRLLTTGTIEEKIYHRQIFKHFMSNRILKDPKQ
RRFFKANSLHELFTLGDQTTDDKKSKTETAAIFAGTGSEIQLQRNSNSHNRKALSHITRK
LVTDVAYKNVSQMSILLTNKSKAFNRNKNLEANGDIDDDIPPVCTSEETGLKDNQQSFST
SFANSTVTSTSQDHLSSLTKSSLQSFEPDGSNEPCCSSSSTKYNDNNPEFLSNDFIKSTP
NETIESEKDQIVGDVESNGVLETQSSLGKRSLKDSYLKVLEKFKQNKAKSIPKPSNKSAK
KKNKPDVDGEAVKNVVRKSKFKQQKDDEGNNKADEYVLSKLLNKGVHSAMQHNVIMNSAN
SDYAIVESEASRVAKEAVRNLRLSRQQYQYPSASRKKFGKTVKRKKVAAKKYDTTNSSDD
DETIHGPFKSSSGPCSSADLLKRMKLRNHIEKPIESSDEEEFSDLDDKDLTNDDLLVRSL
ASFISSRPGKEVSTSQVMANFKEKVSISQAPNFRSMLHQICWKVNDTDGECSWKLKPEFH
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgttgagtgtgaaagcgacccagatgttgtttcccatcaagacagtgaactt
gagctcattccaggagtggacatttacgatgcaaatatcttgcaaaagggaatcgttgag
aagtttaacaaagcttttcttgaaaaacaagcccatgatcttctaaagaaaattgaatcc
attaaaagagacattcgcaatataaacattcttcttgaacaaactgaaaagcaacgttct
catatatcaagtaaaaactattcagaagttagtttgttgaaattgaaatcacttaattca
caaattcaaaagtaccagcagcgactgaggtcactttcaacaaacttggacaaaacacag
ttttccctccatcttcttaatgatgaagccaacaaaaatttaaaggaaaaaacagaagcc
aataatgttttgtcaaaccaggaaataactagaacatcgactgccagtgttttagatata
gatttttcaagtgcgaaaacactcaaggaaagaaaagtattaataaaacgtggtcttgct
actccaacacctctggctgtaccagctaaaaaattgaaaacaactaaaccagctatcaag
ttggatggtacttttggagattctttattttccaacgatacagacaacttgcagaaaaaa
agtaagcaaccagagaagcccttgaaaaataatgagcaatcatcaccaattaagaagaaa
cagaaagaaaaactttctgcaagtgataacctttgtttatcaccaacaaaagcgtccaat
gttaaaaaggaaacaaaagaatcaaaaaaagatgaagacgattatgttccatcagatgat
tatggagagtgtgatgatgtggagttggaggaagaattagatcaaaagttaccctgcaga
agacgtgttatagtcgatgacgcaaatccaaagaaccatcaaaaacgacttgctcattac
aaaaagcaattgctgaaagacatgcaagaaggatatgaggaaccagaagacaagattttg
ccagggggcttgaaggttccaggaagaatatggcaaagactttacaagtaccaaaaaact
ggcgtcaaatggctctgggagcttcacactcaacaaactggtggtattttgggtgatgaa
atgggtcttggaaagacgatacaagttattgcttttctagctgcattgcagaagtccaaa
gttcatgactatgatgcatcgtacaattaccatggtctaggtcctgtacttattgttgct
cctgccacagtcatgcatcagtgggtaagagaactacactcatgggcaccatcacttcga
gttgcaattttgcacaactcaggcacacacaaaggatcccagagtgcgttgatagacaat
atgactctgtctcgtggcattttggtcacgtcatatgagcgtgtcaggctggcactagaa
aatctgctgtcgaagagctggcattacgtaattttagacgaggggcataaaataaggaac
ccagaggcaacaataactcattctgtcaaaatgtttgcaactcctcaccgaattattctg
tctgggtctcccattcaaaatcacttacgtgagttgtggtcactttttgactttgttttt
cccggaaaactcggtacactgcaagtttttatggaacagttttcagtccccattattcaa
ggtggttatgctaatgcatctgaaatacaggtgcaaacagcctacaaatgtgcatgcatg
cttcgcaacacaattgcaccatacttgttgcgtcggttgaaacaagatgtgcaatcgcac
atcaaacttccagagaaacgggaccaggtcctcttttgttcacttacagaccagcaggtg
gaagtttatcaaaactatctcaactctgattcagttgaatccatccttcgtggaagttta
aagatatttgtcggactgatccatcttcggaaaatatgcaaccatccagatttatacacc
ggaggtcataagttactcgccggagaagaaattcctggtcctgatgatgaaaaaaggttt
ggccactggaagcggtcaggaaagatgatcgtggttgaatcattactccgcatttggaag
aagcagaagaagaaggtcctcctcttcacacagagcaaaatgatgcttgatgttcttgag
gatttcatcaagagccaaaactacacgtacctgacaatgcatggtggatcagccataagt
tcacggcagcccatgataaataaatttaatagtgatcctaacatcttcgtctttatccta
acaacaagagttggtgggctaggggtcaatctgattggggctgatagggttattctttat
gatcctgactggaatcccagcactgattcccaagcccaggagagagcatggagaattggc
caaaagaaacaggttactatttaccggcttctaaccacaggaacaattgaggaaaagata
tatcacaggcaaatcttcaaacattttatgtccaaccggatcctgaaagatcccaagcaa
agaaggttttttaaagcaaacagtttgcatgaactatttacacttggcgatcagaccacg
gatgataaaaaaagcaaaactgaaacggctgctatttttgctggcactggatcagaaatt
caactgcaacgaaacagcaatagccataataggaaagctttatcacatatcacacgaaaa
ctggtgaccgatgtggcttataaaaatgtcagccaaatgtctattttgttgacaaataaa
agcaaagccttcaacagaaacaaaaacttggaagcgaatggagatattgatgatgacatt
cctccagtttgcacatcagaagaaactggtcttaaggacaaccaacaaagttttagtaca
tctttcgccaacagtactgttacctctacctctcaggatcatctatcttctcttaccaaa
tcatctctacaatcatttgaacctgatggatcaaatgaaccctgttgttcttcatccagt
acaaagtataatgacaacaatccagaattcctttctaatgattttattaaatcaacgccc
aatgaaacaatagaatcggaaaaagatcaaattgttggtgatgttgagagcaatggagtg
ctggagactcagtcctcattgggcaaaagatctctgaaagattcttatttaaaagttctt
gaaaaatttaaacaaaataaagcaaaaagtattcccaagccttcaaacaaaagtgctaag
aaaaagaataaacctgatgttgacggagaagcagtgaaaaatgttgtacggaagtctaaa
tttaaacaacagaaagacgatgaaggaaacaacaaagcggacgaatacgtgctttccaaa
ctacttaataaaggagtgcacagtgcaatgcaacataatgttatcatgaatagtgccaat
tctgactatgcaatagttgaatcagaagcaagtcgagtggcaaaagaagcagttcgcaat
ctaagactttcacgacaacaataccagtatccaagcgcttcccgtaaaaagtttggaaaa
accgtaaaacgaaagaaggttgcggcaaagaagtatgataccacaaacagtagtgatgat
gatgagactatacatggaccttttaaaagctcttcaggaccttgctcatccgctgacctt
ctcaagagaatgaaactgaggaatcacattgagaagccaatcgaaagttcagacgaagag
gaattcagtgatctagatgataaagatttaacaaacgatgacttactggttagatcatta
gcatcatttatttcctcccgacctggtaaagaagtttctaccagccaagtgatggcgaat
tttaaagaaaaagtcagtatttcccaagcacccaacttcaggtcaatgctgcatcagatc
tgctggaaagtaaatgacactgatggtgaatgttcttggaagttaaaaccagaattccat
tga
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