Clavelina lepadiformis (light-bulb sea squirt): 143465183
Help
Entry
143465183 CDS
T11416
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
clep04040
]
143465183
Ion channels [BR:
clep04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
143465183
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
ATEG07667_C
Motif
Other DBs
NCBI-GeneID:
143465183
NCBI-ProteinID:
XP_076819485
LinkDB
All DBs
Position
7:complement(230693..249509)
Genome browser
AA seq
2197 aa
AA seq
DB search
MSQLNLPAVKSVAFLPQVKTSPDDDIEVDSTSGRSIGDSESESSADELLFPGLNPVVFVK
LRQTTPPRIWCLRMAASPWFERASMLVILINCVTLGLYEPCDPSSNLHCETQRCQISKNI
DDFVFAFFAAEMLVKMIAMGVWGKLGYLGEAWNRLDFFIVLCGMLEYTLPVGEVMNFTAI
RTVRVLRPLRAINRVPSMRILVMLLLDTLPMLGNVLLLCSFVFFVFGVIAVQLWAGTLRQ
RCFLDNETFVLGNGSSMLSPYYDEDMHGDVPVCSIPIIDNGMFSCGDRNILHRTRVDNLT
CTLNVTSFVDGYDVNHIYVDGDGGQDCVDWNQYYNKCEAGGENPSQGAINFDNIMYAWVA
IFQVISLEGWVDIMYYVMDGYSFYSFIYFIFLIVIGSFFMINLCLVVIATQFSVTKQREQ
RLMEEQRLRFKSNDSTLASYSPPGNCYEEMFKYISHLYRKSRRRCRRRWMKYKKKREEQH
QEQEKMKRSEVKKSQSIHLHHHHHYHHHHYHITEPSTLSRSEGVMKVDLNLDLNDPAPQT
LPSTPLMITDGKKESDASVQLKNSFRLAVPSLSPASSILSVPSLPNSLSSSCLSNSTIAK
RRLSDEVIMGSVGAVYFRSGSGESADECKERQPIKSGSDDSSQYVTSDLKCTCPVYDVTN
GDYFPPPGECSDSESSSNANESCWRSRVNYLKHKADKVCDFKSRISEQMKRIVESKHFNR
GIMVAILVNTLSMGIEHHNQSEQLTRVLEISNIVFTTLFALEMVSKLIAFGFIDYIRNFY
NLFDAVIVIISVWEIAAGTENGPGGLSVLRTFRLLRVLKLIRFLPALRRQLVVLMKTMDN
VATFMMLLTLFIFIFSILGMHLFGCKFCSLNVFGDTECDRKNFDTLLWAFVTVFQILTQE
DWNTVLYNGMDATTPFAAIYFITLMTIGNYVLFNLLVAILVEGFQAECNSETQEALERLS
NQSSDEEDVHPHHVLAEEYTSRVARSLGIRSPSGSIERLHGAEEARRSDSETTSEEETDD
ETSRNERRSPEIRVNRASPAPGRSSPRGVPIITRTCATPTPCGSPSSQHKSLIHSFSERD
SESDSGASRLSENQRLSPVASKNDNSSSRRGVHSRKSSTESCLSLGSLSRTGSWKMRMSK
KALPLDEQSLVSWKDDSDDEDIAIPSMTSSFNQQQDKEENKMRALSFSTPPTLSSSSNRR
YSEITYDMVGCECVASLCSGCRRPAPQCMYKRLNWSLYLLPPDNLFRRVISKVVYNRWFD
NFILLFIFGNCVTIAMERPSIKPDSVERQVIDILNYVFTVVFTVEMILKVIASGFYIGDK
PYFKSGWNVLDFFLVVTSLIDVFMTLISSNNSKLLGMLRVFRLLRALRPLRVISRAPGLK
LVVQTLLSSLKPIGNIVLICCAFFVIFGILGVQLFKGKFYYCDGEDVRHVVTRADCTPEV
GQWVNRRYNFDDLGQALMSLFVLASKDGWVEIMYSGIDAVGVDMQPVKNNCVWLIIYFIS
FLLIVGFFVINMFVGVVVENFHRCREEHELQEIARKAELRRKKEERLLRKRTMRQLRGTK
RNQTLRRRTMVRARSHARSVRGAVAEIYQNVLSSCEPNPKHEENYYERYGRMRLALHQFC
MNKYFELAVSAVIGINIITMATEHYNQPKALDLALKYANYVFTSVFVLEAIIKLIALGVC
RYFRDKWNVLDMIIVLLSIAGILIEDVWTQTTFMNPTIIRVMRVLRIARVLKLLKISKGI
RSLLETMARALPQVGNLGMLFLLLFFIFAALGVELFGTLVCDEEHTCEGLNRHASFKNFG
IALLTLFRISTGDNWNGIMKDTLRNTDCSSAPDCTRNCCVSSIMSPLYFVVFVMMAQFVL
VNVVIAVLMKQLEESQADSSVGDDEENDLEDEEDDSDEDQSDAEMKAFLVEEHNVIEIKD
EKPVEDDMLAVDVTDDVSSVDRIPTHGEENNDKHVISSTDASELITSQPNEDFVEECEKE
KVSEESSETSLSDDGDQKAMDTAAQIHSSPSAQATLLILPSTDASNNSVHNLGSKSAEVS
PNRSPIPGALRKSFLKGNCLNLPGIDPDLSSRSTTDLLTSTSKNTFAHRPLAASRSAPAR
TSEDKLDRLNLTPDELNKPFDDNRSKLRRRLSDNSPRPRPNCNHVHHHHYILPPRQISLS
TNNLTSSDNSTPSPNHSSPHSPACHDNDLDLIKSKVT
NT seq
6594 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagttgaatcttcctgcggtcaagtccgtcgcttttcttcctcaagtgaagaca
tccccggatgatgatattgaggtggactccacatcagggaggagcattggagactctgag
tccgagagttcggcggacgagctccttttccccggacttaatccggtcgtcttcgtcaag
ctgagacagacgacccccccacggatctggtgcctgagaatggccgccagcccgtggttc
gagagagcgagcatgctcgtgattctcatcaactgcgtcacgctcggtctgtacgagccc
tgcgacccgagcagcaacttgcactgtgagacacaacggtgtcaaatatcaaagaatatt
gatgatttcgtctttgcttttttcgcggctgagatgttggtcaagatgattgcgatgggg
gtctggggcaagctcggatacctcggcgaggcctggaacaggttggatttcttcatcgtg
ttgtgcggaatgctggaatacactttgccggtaggtgaggtcatgaacttcacagcgatt
cggacagttcgcgtcttacggccacttcgcgccatcaacagagtcccaagcatgagaatc
ctggtcatgctcctcctggacacgcttcccatgctcgggaacgttctcttgctctgctct
ttcgtcttcttcgtcttcggagtgatcgccgtacaactctgggccggaacgttacgtcag
cgctgtttccttgacaacgaaacattcgtgcttggaaatggaagctctatgctgagtccg
tactacgacgaggacatgcacggagatgtgcctgtttgctccattcccatcatcgataat
ggaatgttcagctgcggggaccgaaatattctgcacaggaccagggtcgacaatctcacc
tgcacgctcaacgtcacgtcgtttgtggacggctatgacgtaaaccatatctacgtcgac
ggcgatggcggtcaggattgcgtcgattggaatcagtattacaacaagtgcgaagctggc
ggggaaaacccttcgcagggggcaatcaacttcgacaacatcatgtacgcgtgggtcgcc
attttccaggttatcagtttagagggctgggttgacatcatgtattacgtcatggacggc
tattccttctacagcttcatatattttatcttcctcatcgtgatcggatccttcttcatg
atcaacttgtgtttggttgtcatagcgacccagttctctgtgacgaaacagagagagcag
cgattgatggaggagcagaggttgaggttcaaatcgaacgacagcactctggccagctac
tctcctcctgggaactgctacgaggagatgttcaagtacatctcgcatctctacaggaag
agcaggaggagatgcagaaggcgatggatgaagtacaagaagaagcgcgaggagcaacat
caggagcaggagaagatgaagagatcggaagtgaagaagtcgcaatccatccacctccac
catcaccatcattatcatcaccaccattatcacatcactgagccctccactctgtcacgg
tcggaaggggtcatgaaagttgacctcaaccttgacctcaatgaccccgccccccaaact
ctgccctccacccccctgatgataactgacggtaaaaaagaatctgacgcttccgttcaa
ttgaaaaattctttccggttggctgtccccagcctgtcgccggcctcatccattttatca
gttccttccttgcctaattccttgtcctcatcttgtctatccaattccaccatcgctaag
agaagattgtccgatgaagtcataatgggttctgttggcgcagtctacttccgatccggg
tccggtgagtccgccgatgaatgcaaagagcggcagccgataaaatctggttcagacgat
tcaagtcaatacgtgacctctgaccttaagtgtacctgtcccgtttacgacgtcacaaac
ggagattatttcccaccgcctggagagtgctcagattcagaatcgtcatcaaacgcaaat
gagagttgttggagatcgagggtaaactatttaaagcacaaagcggacaaagtttgtgat
tttaagtctcggatatcggagcagatgaaacgaatcgtagaaagcaaacacttcaaccga
ggcatcatggtcgccatcttggtgaacaccctcagcatgggaatcgagcaccacaaccag
agcgagcaactaactcgcgtgcttgagataagtaacatcgtcttcacgaccctcttcgcg
ctcgagatggtttcgaaacttatcgcgttcggattcatcgattatattcgaaacttctac
aacttatttgatgccgtcatcgtcattatcagtgtttgggagatcgcggccggtaccgag
aacggccccgggggcttgtctgtcctccgaacatttcgactcctccgggttttaaaactt
ataaggtttctacctgctctgcggcgccagctcgtggtcttgatgaagacaatggacaac
gtcgcgacgttcatgatgctactcacattgttcatattcatctttagcatcttaggaatg
catttgttcggctgcaagttttgttcgttgaacgtgtttggcgacaccgagtgcgacagg
aaaaacttcgacactctactgtgggcgttcgtcactgtgtttcagatcttaacacaagaa
gattggaataccgtcctttacaacgggatggacgccaccacaccgtttgccgccatttac
ttcatcactctgatgaccatcggcaattacgttctcttcaatctcctggtcgccatcttg
gtcgaaggcttccaggccgagtgtaactcggaaacacaagaagcgctggaaagattgtcc
aatcagagctcagatgaggaagatgttcatccgcaccacgtgctggcggaggaatacaca
agcagggtagcgaggtcgctgggaataagaagtccatccgggagcattgagagattgcat
ggagcggaggaggcgagaagatcggactcggagacgacaagtgaagaggagactgatgac
gagacgtcacggaatgagagaagatctcctgaaattagggttaaccgagcctcaccggct
ccagggcgcagttccccgcgcggtgtccccattatcacgcgcacatgcgccacccccacc
ccttgtgggtcgccctcctcccagcacaagtccctcattcactccttctccgagcgcgac
agcgaatcagactccggcgcgtcacggttgagtgaaaaccagcgcttaagccctgtggct
tctaagaacgacaattcgtcatcaaggcgtggcgttcactctcgaaagtcaagtacagag
tcgtgtcttagcttgggctccctttctcggaccggatcctggaagatgaggatgagtaaa
aaggctcttcctttggatgagcaatctctcgtttcatggaaggacgactcggacgacgaa
gatatcgctattccgagcatgacgtcatcgttcaatcaacagcaggataaagaagagaat
aaaatgagggccctctctttctccactcccccaactctttcatcgtcgagcaatcgtcgc
tacagtgaaatcacatacgacatggtgggatgcgaatgtgtggcgtcgttatgctccgga
tgcaggcgcccggctcctcagtgcatgtacaagaggttgaactggtcgctctacctcctc
ccgccagacaacctatttcgaagagttatctcgaaagtggtttacaacagatggttcgac
aactttattttgttgtttattttcggtaattgcgtcacaatcgccatggagaggccgtcc
atcaagccagacagcgttgagcgccaagtcatcgatatcctcaattatgtcttcacagtc
gtcttcacggtcgagatgattctgaaagtaatcgcaagcggtttctacatcggggataaa
ccttactttaaaagcggctggaacgtgcttgacttctttcttgttgttacgtcattgata
gacgtctttatgacgttgatatccagcaacaattccaagttgcttggcatgcttcgtgtg
ttccgcctgttacgtgcactccggcctctcagggtcattagccgggccccaggtttgaag
ctggttgttcaaaccctgctgtcttcgcttaaaccgatcgggaacattgtgctcatttgc
tgcgccttcttcgtcatcttcggcatcctgggagtccagctcttcaagggaaagttctac
tactgcgatggcgaggatgtacgtcacgtggtcacaagggctgactgtacaccggaagtg
gggcagtgggtcaatcgaaggtacaactttgacgacctgggccaggcgctgatgtcactg
tttgtgctggcttcgaaggacggatgggtcgagatcatgtacagcgggatcgacgctgtg
ggggtggatatgcagccggtcaagaacaactgcgtgtggttgatcatctatttcatctct
ttcctgctcattgttggcttcttcgtcatcaacatgttcgtgggggtggtggtcgaaaac
ttccaccggtgcagggaggagcacgaactccaagagatcgcgagaaaagcggaattgcga
cgtaagaaggaggaacgtcttttacgtaaacgcaccatgcgtcagttgcgtggaactaaa
cgcaatcagacgttacgaagacgcaccatggtacgggcacgttctcacgcacgaagcgtc
agaggagcggttgcagaaatttatcaaaatgtcctgtcaagttgtgagcctaatcccaaa
catgaagagaactattacgaacgctacggtcgaatgcgcttggcactgcaccagttctgc
atgaacaagtacttcgagctcgccgtgtctgctgttatcgggattaacatcatcaccatg
gcaaccgaacactacaaccagcctaaggcgttggatctggcgctgaaatacgccaactac
gtcttcacgtctgtcttcgtgctggaggcgatcatcaagctgatagcgctgggagtgtgc
agatatttcagggacaagtggaacgtgttggacatgatcatcgtcctcctctcaatcgcc
ggcatcctcatcgaagatgtgtggacccagaccactttcatgaaccccaccatcatcagg
gtcatgagggttctcaggatcgcaagagttctgaagttgctcaagatctcgaagggaatc
cgctcgttgctcgagacgatggcgcgcgctcttcctcaggtcggtaacctcgggatgctc
ttcctgctcctcttcttcatctttgccgctctcggagtcgaactcttcggaactctggtt
tgcgacgaggagcacacctgcgaaggtctcaaccggcacgcctcgtttaaaaacttcggc
attgctctcctcactttgttccggatctcaaccggagacaactggaatgggatcatgaag
gatactctgaggaacacggactgttccagcgccccggactgcacgaggaattgttgcgtg
agtagcatcatgtctcctctctactttgtagtcttcgtcatgatggcgcagttcgtcctg
gtaaatgtcgtcatcgccgttcttatgaagcaattggaagagagtcaggctgatagttcg
gttggcgacgatgaggaaaatgatttggaggacgaggaggatgattctgatgaagatcaa
agcgatgcggagatgaaggctttcttggtcgaagaacataacgtcattgaaatcaaagac
gaaaagccagtcgaagatgacatgttggcagttgacgtcactgatgacgtatcttcagtc
gaccgaatccctacgcacggggaagaaaataacgataaacacgtcatcagctcaacggat
gcttctgagttgattacgtcacaaccaaatgaagattttgtcgaagaatgtgaaaaggaa
aaagtttcagaagagagctcggaaacttcgttaagcgacgacggagatcagaaggcgatg
gacaccgccgcacaaatacattcgtcccctagtgctcaagcaactttgctcatcttgcca
tcgaccgatgcctcgaacaactccgttcataatctcggctccaagagcgcagaggtttcc
cctaacagaagcccgatcccaggagcacttcgaaaaagttttctaaaaggaaattgctta
aatcttcctggaatcgatccagatttgtcatcgcgatcgacaaccgacctcctgacatcg
acatcaaagaatacttttgctcaccgtccgctagcggcatcgcggagtgcccctgcaagg
accagcgaagataaacttgatcggttgaacttgaccccggatgaactgaacaaaccattc
gacgacaatcgctcgaagctaagaagacgtttaagcgataattcgccgcggcctcgaccc
aactgcaaccacgtccaccaccaccattacattctcccccctcgccagatctctctatcc
acgaacaatctcacatcgagcgacaactcgactccctcaccgaatcattcctctcctcat
agccccgcttgccatgacaatgatcttgaccttataaagagcaaagtcacttga
DBGET
integrated database retrieval system
