Clavelina lepadiformis (light-bulb sea squirt): 143468275
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Entry
143468275 CDS
T11416
Name
(RefSeq) superkiller complex protein 2-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143468275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143468275
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
143468275
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
143468275
mRNA degradation factors
3'-5' decay
Ski complex
143468275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
ResIII
Helicase_C
DEXQc_Suv3
Ski2_N
MTR4-like_stalk
Imm47
nSTAND3
PhoH
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
143468275
NCBI-ProteinID:
XP_076821497
LinkDB
All DBs
Position
8:1015626..1030684
Genome browser
AA seq
1217 aa
AA seq
DB search
MNDNLEFPFTLLEVSNGRRCNLAAVEFKEEKKQLYNLPPSLLPLDIPPVLDSLVPDQIEA
KINEKLNNEENLVSSSSVKRVWTRLTDISSLNSIDLCPLRTSIQVERNETNGRLLGFYEA
EAKEEGVVGKKLLYDDGFLMGSGSMETIVKPDEINSDLFETNFLTCPPGFDDGMHFEAKK
SGKSSSAFNLGSVLFNKEFTEQFGSQPQTDEVLVEENELEALPTLEEELPAVNKAAAKPD
EKETAKNQKKPSDSPVEESWAEEIDMKTSVSNFHKAVPSMAHKYPFELDVFQKHAVLKLE
DHQSVFVAAHTSAGKTVVAEYAIALTAKHVTRVIYTSPIKALSNQKFRDFKQTFSDVGLI
TGDVQINPEAFCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIM
LPEHCNIILLSATVPNAFEFANWIGRTKQKKIYVISTPKRPVPLEHFLYTGNSNKTSDQM
FMIVDGNRKFLTSGHKQAVDAKNQRTSKYNKSFGAKYRSGGGPSADKGVWLSLITRLRKL
NQLPVVAFTFSRRRCDENAASLESLDLTSSSEKREIKVFFRKCVQRLSGSDRALPQVLQM
SSLLERGVGVHHSGVLPILKEVIEMLFTRGMVKLLFATETFAMGVNMPARTVVFDSLRKH
DGTQMRNLLPGEYIQMAGRAGRRGLDSTGNVILLCKGDIPDISELHTMMLGRVTKLHSQF
RLTYGMILNLLRVEQLRVEEVMRKSFSEFHSRKDSKTQEEELRRLNEELARRSDVEALLR
FTDYEQYFLCCQELMELRHRILEQTLTNAATLKVMNPGRVVVLAGKYQHHVAITLKTNTA
KSTVAFSVLALLDKSSSDSVDAGAIWHPASILRRKLYRPESVTQGLVDVTLNEISHITNK
TLRVQADTIIADCKRRQVPRFRSDSPDQATSIACQQLLRLVDSNPEGLSPVDVISEMGVN
QVQMFEDVTRMKSLESSIDSCFQCVERPSFKSQILEVESYLKLKEEYNKIKFLLSDESLL
LLPEYQQRVMVLQKLRYVDDNSAVQMKGRVACEISTHELILTELVFENVLSHLEPTEIVA
LLSCCVFQQKIDMEAVSLTARLKEGMNRIIEVATMIGQTQYDVEIRQSVDDFVSVLKFGL
VEVVYEWAKGTSFKDITNLTDVQEGMIVRTIQRLNELCRDVRNAARVIGDPVLYSKMEKC
SELIKRDIVFAASLYIH
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataacttggagttccctttcacattgttggaggtgagtaatggacgcaggtgc
aaccttgctgctgttgaatttaaagaagaaaagaagcaactttataatttgccgccgtcg
ttacttcctctcgatatacctcctgtgctggactcgctcgtcccagatcaaatcgaagct
aaaattaatgaaaaattaaacaacgaggaaaatcttgtatcatcgtcatcagttaaaagg
gtgtggacaaggctgactgacatctcttcactaaactcaattgacctttgccctctgaga
acatcaatacaggttgagagaaatgaaacaaacggtcgattgcttggtttttacgaagcc
gaggcaaaggaagaaggtgtggttgggaagaagctgctttatgatgacggttttctcatg
ggaagtggcagcatggaaaccattgtgaaacctgacgaaattaattctgatctctttgaa
acaaattttctaacttgtcctccaggatttgacgatggaatgcattttgaagcaaagaaa
agtgggaaatccagttctgctttcaatcttggaagcgttcttttcaacaaagaattcacg
gaacagtttggctcacaaccacaaacagacgaagtgcttgttgaagaaaatgagttggaa
gccctgccaacgttggaagaagaactaccagctgtgaataaagcagccgcaaaaccggac
gaaaaagagacagcgaaaaatcaaaagaaacccagtgacagcccggtagaagaatcgtgg
gctgaggaaatagacatgaaaacatctgtatctaatttccataaagccgtccctagcatg
gcccacaagtacccgtttgaactggacgtgtttcaaaagcacgccgtactcaagctggaa
gatcatcagagcgtctttgtggccgctcacacctctgcaggaaagaccgtggttgccgaa
tatgcaatcgcgctgaccgcgaagcacgtgaccagggtcatatacacgagtcctatcaag
gctttgtcgaatcagaagttcagagatttcaagcaaaccttctcagacgtcggcctaatc
accggtgacgttcagattaatccagaagccttctgtcttatcatgaccaccgagatcttg
agatcgatgctgtacaacggttccgatgtcatacgggacttggaatgggtcatattcgac
gaagttcattacatcaacgatgcagagagaggagttgtgtgggaagaagtcctcattatg
ctcccggagcactgcaacatcatcctcctcagcgcgactgtcccgaacgcgttcgaattc
gcgaattggatcggacggaccaagcagaagaagatctacgtcatcagcactccgaagaga
ccggttcctctcgaacatttcctttacacaggcaacagtaacaagaccagcgaccagatg
ttcatgatcgtagacggcaacagaaaattcctcacatctggtcacaagcaagccgtagat
gccaagaaccagcggacgagcaaatacaacaaatcattcggcgcaaaataccgcagcggc
ggtggtccctcagcggacaaaggtgtatggttgtcactcatcactcgcctgagaaaatta
aatcagctcccggtagttgcgttcacgttttcccgcagaagatgcgatgaaaacgcggcc
tcccttgaatcgctcgacttgacgtcgagctcggagaaaagagaaatcaaagtttttttc
cgcaaatgtgtgcaaaggctgtcaggaagcgaccgggcgttaccccaggtgcttcagatg
tcgtctttattggaacgcggtgtcggggtccaccacagcggggtacttccaatactgaag
gaagtgattgaaatgctcttcacgaggggaatggtgaaattgctcttcgccaccgagacc
tttgcaatgggcgtgaacatgcccgcacgtactgtggtgttcgacagcctgagaaagcat
gatggcacgcagatgaggaatcttttgccaggggagtacatccaaatggctggaagagcg
ggaagacgtggtttagattcaaccggaaacgtcatcttgctgtgcaagggtgacatcccg
gacatatcggagcttcacacgatgatgctgggaagagttaccaagcttcattcccagttt
cgcctcacctacggcatgatcctcaacctgctccgggtcgaacagctccgcgtcgaggaa
gtgatgaggaaaagcttctcggagttccattccaggaaagactcgaaaacgcaagaagaa
gagctgaggaggctgaatgaggagcttgctcggaggagtgatgttgaggctcttttgcgc
ttcaccgactacgagcagtacttcctatgttgccaggagctcatggaattacgtcatcga
attctggagcaaactttgacgaacgcggccacgctaaaggtcatgaaccctgggagagtc
gtggtattggccggcaagtaccaacaccacgtcgccattacgctcaagaccaacacggct
aaatcgaccgtggccttctcagtgctggctctgctggataaatcctccagtgattcagtt
gatgccggcgccatctggcatcccgcgtccattcttagaagaaaactctatcgaccggag
tcagtgactcagggattggtcgatgtcactctcaatgaaatatctcacatcaccaacaaa
acacttcgcgtgcaagccgacaccataatcgctgattgcaaacggagacaggttcctcgg
ttcagatcagactcacctgaccaagccaccagtatcgcatgtcagcaactgctgcgattg
gtcgattcaaatcccgaaggtctctctcccgttgacgtcatctccgaaatgggggtcaat
caagttcagatgttcgaggacgtgaccagaatgaagtcgttggaaagttcgattgacagt
tgctttcaatgcgtggagcgacccagctttaaaagccagattcttgaagtcgaaagttac
ctgaagctgaaggaagaatacaacaagataaaattcttactcagcgatgagagcttactc
ctcctgcctgaatatcaacagcgggtgatggttctgcaaaaactgcgctacgttgatgac
aacagcgccgtacagatgaagggtcgagtcgcttgcgaaatttcaacccacgaactcatc
ctcaccgaactggtgttcgagaacgttctttcccacctagaaccgacggagattgtcgct
ctactatcctgctgcgtcttccaacagaagatcgacatggaggcggtctccttgacagct
cgcctgaaggagggtatgaatcgcatcatcgaagttgccaccatgatagggcagactcag
tatgacgtggaaatacgtcagtcggtggacgacttcgtatctgttttgaagtttggtttg
gtcgaagttgtgtatgagtgggctaaaggaacctctttcaaagacataacgaacctcacc
gacgtacaagaaggaatgatcgtgcgcaccatacagaggctgaacgagttatgtcgcgac
gtgagaaatgctgcccgtgtcatcggcgatcctgtgctttattccaagatggagaagtgt
tccgagctcatcaagagagacattgtgttcgccgctagtctttacatacactga
DBGET
integrated database retrieval system
