Clavelina lepadiformis (light-bulb sea squirt): 143469136
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Entry
143469136 CDS
T11416
Name
(RefSeq) uncharacterized protein LOC143469136
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143469136
03009 Ribosome biogenesis [BR:
clep03009
]
143469136
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
143469136
Spliceosome [BR:
clep03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
143469136
Ribosome biogenesis [BR:
clep03009
]
Eukaryotic type
90S particles
Helicases
143469136
Pre-60S particles
143469136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SecA_DEAD
TcpC-like_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
143469136
NCBI-ProteinID:
XP_076822825
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All DBs
Position
8:15881215..15883465
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AA seq
615 aa
AA seq
DB search
MSDHMRKVRKKLAKRKDRQLQLKQLRDKLLQDEVTTDTGNEYSKLHGQNEPKSTSSEPLK
GSLRKESEEDKKSSTNEETGFEMETTSENETAQSSVIEPLKSEVKLTTAPDSSLEVKVMA
DDALQDTSFSSLAALGVSDLTLKAIEEMGFTHMMEIQAKSIPPLLEGRDLLGAARTGSGK
TLAFLIPAVELLYKLRFMPRNGTGVIIISPTRELAMQIYGVMQDLLKHHCHTYGLIMGGS
SRSSEAKKLGNGINILVATPGRLLDHLQNTAEFMFRNLQCLIIDEADRILEVGFEEEMKQ
IVRLLPKRRQTMLFSATQTKKTEDLARVSLKKMPLYVGVDDSKSDATVDGLEQGYVVCPS
EKRFLVLFTFLRRNRDKKIMVFLSSCMSVKYHYELLNYIDLPCMCIHGRQKQTKRTTTFF
QFCNAEKGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGVNGSGHALLI
LRPDELGFLRYLRHARVPLNEFEFSWSKIANIQTQLERLIQKNYFLHKSSQEAYKSYVRA
YASHSLKSIFNVETLDLTKVALSFGFAVPPYVDLNVHSKRGSKDARRNQYKNQNPKAKIF
KAAGTKRKDRRQFSN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcatatgcgcaaagtaagaaaaaaattggcaaagagaaaagatcgacaactg
caattaaagcagctgagagataaactgttacaagatgaagtcacaacagacactggaaat
gaatattcaaagcttcatggccaaaatgaacccaagtcaacttcgagtgaaccattgaaa
ggctcgcttcgaaaggaatctgaagaagataagaaaagcagcacgaatgaagaaacaggc
tttgaaatggaaactacaagtgagaacgaaaccgcacagagttctgtaattgaaccttta
aaatctgaagtaaagctaaccactgcacctgactcctcattggaagttaaagttatggct
gacgatgcattacaagatacgtcgttttcgtctcttgctgctctaggggtaagtgactta
acactcaaagcaattgaagaaatgggatttacccacatgatggaaattcaagcaaaatcc
ataccaccattgctagaaggcagagatttgctgggtgcagctagaactggaagcggtaaa
actttagcatttcttataccagcagttgagctcttatataaacttagattcatgccaagg
aatggaactggggttatcatcatatcacctacaagagaacttgccatgcagatatatgga
gttatgcaagatctattgaaacaccattgtcacacatatggcctgataatgggtggtagc
agtcgatcatcggaggcaaaaaaattaggcaatggcattaacatccttgttgccacacct
ggaaggctcttggatcatcttcagaatacagcagagtttatgttccgaaacttacagtgt
ctcataatcgatgaggcggatcgaattttggaggttggttttgaagaagagatgaaacaa
attgtgagattgttaccaaagcgccggcaaaccatgttattttctgctacgcaaacaaag
aaaactgaagatttagcacgtgtgtcgttaaagaagatgccactgtatgtgggagtagat
gatagtaagtctgatgccacagttgatggacttgaacaaggttatgtcgtttgtccatca
gagaaaaggtttctggtcttgtttactttcttgaggaggaatcgcgacaaaaagataatg
gtatttttatcatcatgcatgagtgtaaagtatcactacgagctcttgaattacatagat
cttccatgtatgtgcatacatgggcgacagaagcaaaccaagagaacgacaacattcttc
caattctgcaacgccgaaaaaggaatcctgctctgcactgatgtggctgctcgaggtctg
gacatccctgaggtggactggatagtccagtatgatcctcctgatgatccaaaagaatac
atccacagggttgggcgtacagctcgaggagtcaatggatcaggacatgccttgctgatc
cttcgacctgatgagcttggatttctgcgttaccttcgtcatgctcgagtgcctttgaat
gagtttgagttctcttggagcaagatagctaacatccagacacagctggagcgacttatc
cagaagaactacttcttgcacaaatcatcccaggaggcgtacaaatcatacgtccgtgcc
tatgcctctcattcactgaaatctattttcaatgtcgagacacttgatctcacaaaagtc
gccttatcatttgggtttgcagttccaccttacgttgacttgaacgttcacagcaagaga
ggaagcaaagatgctcgaaggaaccaatacaaaaaccagaatcccaaagcaaagattttt
aaagctgctggcaccaagaggaaagataggagacaattttcgaattag
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