Clavelina lepadiformis (light-bulb sea squirt): 143469853
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Entry
143469853 CDS
T11416
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03030
DNA replication
clep03420
Nucleotide excision repair
clep03430
Mismatch repair
clep03440
Homologous recombination
clep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
143469853
03420 Nucleotide excision repair
143469853
03430 Mismatch repair
143469853
03440 Homologous recombination
143469853
03460 Fanconi anemia pathway
143469853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clep03000
]
143469853
03032 DNA replication proteins [BR:
clep03032
]
143469853
03400 DNA repair and recombination proteins [BR:
clep03400
]
143469853
Transcription factors [BR:
clep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
143469853
DNA replication proteins [BR:
clep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
143469853
DNA repair and recombination proteins [BR:
clep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
143469853
MMR (mismatch excision repair)
143469853
DSBR (double strand breaks repair)
HR (homologous recombination)
143469853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143469853
NCBI-ProteinID:
XP_076823826
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Position
8:complement(12895075..12897598)
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AA seq
609 aa
AA seq
DB search
MGCHLSEGAIQALMNGETPSNPVLQCLGIKTISGSGMDRVRLLLSDGLQSFGTSMLASQL
NHLVTDGKLETFTVIRITQYQSTMLQGTKRILICLNLEIVKKAVEIGGKIGGPIPLAQAA
GVGNVQQRAAPAKAYQNENICPPAPNTMQSPKPSHKTPWGKDEAPVTPGGTATRIMPIGA
LTPYQNKWSIRARVSQKGQMKEWKNARGEGKLFSFTVLDDSGDIRITCFKEEADKYFDII
EMGKVYYISNASLKPANQQYNNTSHDYEMTLRRDSVVTICDSGDSDTVPKIHYSFKKIKD
LEKDINSFVDVIGIVKSVDELSTIMIKSQNREAKVRKFSLVDQSGAEIRVTLWGKEAENF
DGSSNPVVALKGAKVSDFGNCSLSTVSTTTLSISPEITEAYELKNWYATGGSTQATQNLT
TTGTGGGGSSSANWKTLADIKFESLGTSDKPDYITTKVTVLYCKKENALYQACPNAQCNK
KVVDEGNGQFRCEKCNTQSSSFKYRMILNMHLADEYDSTWVTCFQEQGEMLLGVTAEEIG
LLKVENESGYETALKKMNFNSYFMKLRVKSDKFNDEERTRVTVTNLSPISYVDYAQKLFA
DIDELQQAV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtcatctttctgaaggagctattcaggcactcatgaatggtgaaacaccatca
aatccagtgttgcagtgcttaggaattaagactatttctggttcaggaatggatagagta
agattacttctctccgatggacttcagtcatttggaacgtctatgttggcttctcagtta
aatcatcttgtaactgacggaaaacttgagacatttactgtcatccgaataacgcagtac
caatctaccatgttgcaaggcactaaacgaattttgatatgccttaatttggaaattgtt
aaaaaagctgttgaaatcggaggaaaaattggaggtccaattccactggctcaagcagct
ggtgttggaaatgttcaacagcgtgctgcaccagcaaaagcttatcagaatgaaaatatt
tgtccaccagcaccaaataccatgcaaagcccaaaacctagtcataaaacaccttgggga
aaagatgaggctcctgttacacctggtgggacagcaacaagaataatgcctattggagct
ctaacaccttaccaaaataagtggtccattcgagctcgagtttcgcaaaaaggccaaatg
aaggaatggaaaaatgctcgtggtgaaggaaagttgtttagttttacagttctggatgat
tctggtgatatacgaattacttgttttaaggaggaagctgataaatattttgatataatt
gaaatgggaaaggtttattacatatctaatgcatctcttaaacctgccaatcaacagtat
aacaacacttctcatgattatgaaatgactcttaggagagatagtgttgtcacgatttgt
gattctggagacagtgacacggtgccaaaaattcattattctttcaagaagattaaagac
ttggaaaaggatattaatagttttgttgatgtgataggtattgtaaagtctgtggatgaa
cttagtacaatcatgattaaaagtcaaaatcgagaagcgaaagttcgcaagttttctctg
gttgatcagtcaggagcagaaattcgtgtcaccttatgggggaaagaagccgaaaatttt
gatggttcttctaatcctgttgttgcattgaaaggggcaaaggtttcagattttggaaat
tgttcgttgtccactgtcagtacaacaacactaagtatcagtcctgagataaccgaagca
tatgagcttaaaaattggtatgcaactggaggtagcactcaagcaacacagaatcttacc
acaactggaactggtggtgggggcagtagctctgcaaactggaaaactttggctgatatt
aaatttgaaagtcttggcactagtgacaaaccagattacataacaacaaaagtaacagtt
ctctactgtaagaaggaaaatgccttgtatcaggcatgtccaaatgctcagtgcaacaaa
aaagtggttgatgagggcaatggacaatttcgatgtgaaaagtgcaacacccagtcatcc
tcattcaagtacaggatgatacttaacatgcatttagctgatgagtatgacagcacttgg
gtaacttgctttcaagagcaaggagagatgttgcttggcgtaactgctgaagaaataggc
ttgctgaaagttgaaaatgagtctggttatgagacagctctaaagaaaatgaatttcaat
tcttatttcatgaagcttagagtgaaatcagacaagtttaatgatgaagaaaggacaaga
gtaacagtgactaatctttctcctataagctatgttgattatgcccagaaattgtttgct
gatattgatgaacttcaacaggctgtttga
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