Clavelina lepadiformis (light-bulb sea squirt): 143470341
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Entry
143470341 CDS
T11416
Name
(RefSeq) structural maintenance of chromosomes protein 3-like
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clep03036
]
143470341
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
clep00535
]
143470341
Chromosome and associated proteins [BR:
clep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
143470341
Meiosis-specific proteins
Cohesin complex and associated proteins
143470341
Proteoglycans [BR:
clep00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
143470341
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
143470341
NCBI-ProteinID:
XP_076824516
LinkDB
All DBs
Position
9:3584896..3596915
Genome browser
AA seq
1203 aa
AA seq
DB search
MHIKKVSIQGFRSYRESTEIEPFSSRHNIIVGRNGSGKSNFFCAIQFVLSDEYNNLRAEQ
RQQLLHEGTGARVISACVEIVFDNSDNRLPIDKDEVTLRRVIGSKKDQYFLDKKMVTKSD
VLNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLQLLREVAGTRVYDERKEESEQLMR
ESETKNGKIEELLGMIEDRLSTLNEEKEELAQYQQWDKTRRALEYTIHNQELNETRNKLD
QLSNRRENNSVQTKHLRGQLEEAQKRTKDYQKQLSHVSSRIKQFVEEKEQSTTDRQELIK
KKAQLELSCTDLNDEVKADEQSWQQARNELEELQLKITTKTREKEQIVPQFEEMMRKEKD
TEKRLKISEQRRKELYAKQGRGNQFRNREERDSWIQNELRTLQRGINDKKTQIENLTDDI
RATKVKLEELGHSIREREHNIQEHKKSTDALTKDSLNLKRRKDELQSQRQRLWRAETTIQ
QEIDNITSESKAKEHLLNSLIGKAAFHGLESIRKVIESFRRQGQMDLVNGYKGMLIENFR
CSKNFFTCVEVTAGGKLYNHVVTNDRVGTKFLNEMNQLKLPGEVTFLPLNKLESRHIEYP
QTADAIPMISKMQFDEEYEVAMRYVFGKTLICRSMEVSTQLARAHQLDCITLEGDQVSRR
GALTGGYVDNRKSRLDLYTSKKDLETELREKEQELALNKEQQQKHEAESTSVMDELQKQE
TRNKQNKDVYERLKGDLRVLKEQEQAMQRALEPKERSLQSLQTNCEALQSTKLSLEEEMG
TDLLSQLSTDDQQEVDRLNDEIKELTSVHKEAMQQRVRLESKKTSLDTLLADNLVRRKDQ
LQQEMLELSVDFRKQRLVQAESDHRTTEESLATIDERLKDVDQELIGMEREQSHLTTRVE
ECRAKEREWREKISDDSRELEKATNKQSMLIKKKEECMKKIRDLGSLPQDAFDKYQGLSH
RQLMKRLDECNQELKKYSHVNKKALDQFVSFSEQKEKLLARKEEIDRGKQAILHLMEHLE
HQKYEAIQFTFRQVSKNFSDVFVKLVPGGKATLIMKKGDVPPDSETQSSDQSASIVDQFV
GVGIKVSFSGKAAETREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDPAHR
TSVAAMLKELASTAQFITTTFRPELLEAADKFYGVVYRNKVSMVRTITIDEAREFVEDDQ
VHS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgcatatcaaaaaggttagcatccagggtttcagaagttatcgagaatcaacagaaata
gaaccattcagttcaaggcataacatcattgttggccgaaatggatctggcaagagcaac
tttttctgtgcaatccaatttgttttaagtgacgagtacaataacttgcgtgcagagcaa
cgtcagcaactattacatgagggcactggtgctagagtaatttcagcatgtgttgaaatc
gtctttgacaactcagataatcgcttgcctattgataaggatgaagtaacattacgtcgg
gttattggatcaaagaaagaccaatattttcttgacaagaaaatggtcacaaaaagcgac
gtcttaaatctactggaatctgcaggtttttccagaagcaacccttactatattgtaaaa
caaggaaagattaaccaaatggcaactgctcccgactctcaaagactccagctattgagg
gaagttgctggaactcgtgtctatgatgagaggaaggaggagagtgagcaactgatgcgg
gaatctgagacaaaaaatggcaagattgaagagttgctcggcatgatcgaagatcgtctt
tccactttgaacgaggaaaaagaggaactggctcaataccaacaatgggataaaacgagg
agggcgttggaatacacgattcacaaccaagaactaaacgaaaccaggaacaagcttgac
cagttatccaataggagagagaacaactctgttcaaacgaagcatctcagaggtcagttg
gaagaagcacaaaaacgtacaaaagattaccagaagcaactgagtcatgtgagttcaagg
attaaacaatttgtggaggaaaaggagcaatctacgactgatagacaagaactcatcaaa
aagaaggctcaacttgaattgagctgcactgatctcaacgatgaagtaaaagcagacgaa
cagtcgtggcagcaggccagaaatgaactggaagaacttcaacttaaaataacgacaaag
acgagagaaaaagaacaaattgtgcctcagtttgaagagatgatgaggaaagagaaagat
acagaaaaaagactgaagatatctgaacaaagaagaaaagaactttatgctaaacaaggt
cgtggtaatcagttccgtaatcgcgaagaaagagactcgtggatacagaatgagttgcgg
actctgcaacgaggaatcaatgacaagaagacgcagattgaaaatctcacagacgacatt
agagccaccaaagtgaaacttgaagagctgggtcactcaattcgagaaagagagcacaac
attcaggagcataaaaagagtacggatgccctcaccaaagattcgctcaacctgaagcga
agaaaagatgaactgcaaagtcagagacaacgattatggagggctgaaacgactatccag
caagaaattgacaacattacctctgaaagcaaagccaaagaacacttgctgaattctttg
ataggaaaggctgcttttcatggactggagagcattcggaaggtgattgagtctttcagg
agacaaggtcagatggatttggtcaacggatacaaaggaatgctgattgaaaatttcaga
tgttcaaaaaattttttcacttgtgtcgaggtcactgcaggtggaaaactatacaaccac
gtagtaactaatgacagggtcggcacaaaattcttgaatgaaatgaaccagttgaagttg
cctggggaagttacctttcttcctttgaataaactggagagccgccacattgaatatcct
caaacagccgatgctattccgatgatcagtaagatgcagtttgatgaggaatatgaagta
gccatgagatatgtgtttggcaaaacgttgatctgtcgttctatggaggtatcaactcaa
ctcgctcgagctcaccaacttgattgcatcacgcttgaaggtgaccaggtgtcacgaagg
ggagctctaaccggtggatatgtcgacaatcgcaaatcgcgccttgatctttacacttcc
aaaaaggatctggaaactgagcttcgagaaaaagagcaagagctggccttaaacaaggaa
cagcaacaaaaacatgaggctgaaagcacgtcagttatggacgagcttcaaaagcaggaa
actcgcaataaacaaaacaaagatgtctatgagaggctgaaaggggacttgcgtgtttta
aaagaacaagagcaagcaatgcagagagcactggaacctaaagagcgatccttgcaaagt
ctccaaacgaactgcgaggctcttcaatctacaaagctatccttggaggaagagatggga
acagacttgctctctcagctctctactgatgatcaacaggaggtggatcgtttgaacgac
gaaattaaggaactgacatccgtgcacaaagaagcgatgcagcaaagagtgcgcttggaa
agcaagaagacaagcctcgataccctgcttgccgataatcttgttcgtaggaaagaccaa
ctgcagcaggaaatgcttgaactctcagttgatttcagaaaacagaggttagtccaggct
gaaagtgatcatagaaccacagaggaaagcctggctacgattgatgaaagacttaaagat
gtggatcaggagttgatcggaatggaacgggagcagtcacatctaaccactagggtggaa
gagtgcagggccaaggagagagaatggagagaaaaaatttccgacgactcaagggaatta
gagaaggccaccaacaaacaaagcatgttgatcaaaaagaaagaggagtgtatgaaaaaa
attcgtgacttgggctcgctgcctcaagatgccttcgacaaatatcaaggactcagccat
cgacaactgatgaagcgtctcgatgaatgcaaccaagaactgaagaagtattctcacgtt
aacaagaaagctttggatcaatttgtgtccttctcagaacaaaaagaaaagctgctcgca
aggaaggaggagattgacagaggaaagcaggcaattttacacctgatggaacacttggaa
catcagaagtatgaagcgatccagttcacattcagacaggtttccaaaaattttagcgat
gtttttgtaaagcttgttcctggaggaaaagcgacgctgatcatgaagaaaggggacgtg
cctcctgacagtgagacacagtcaagtgaccaatccgcatcaatcgttgaccagtttgtt
ggagttggtataaaggtgtccttctctgggaaagctgcagaaactcgtgagatgcaacaa
ctttccggtggtcagaagtccctggtcgcccttgcgctgatctttgctatccagaagtgt
gacccagccccgttttatctctttgatgagatcgatcaggctttggaccctgctcatagg
acctcagtggctgcgatgctgaaagaacttgcgtcaacagcccagttcattaccacaacg
ttcagaccagaattgctggaagccgcagacaagttttatggggttgtatacagaaataag
gtttctatggtacgcactattacaatagatgaggccagggagtttgttgaggacgatcaa
gtgcacagttaa
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integrated database retrieval system
