Clavelina lepadiformis (light-bulb sea squirt): 143470346
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Entry
143470346 CDS
T11416
Name
(RefSeq) ATP-dependent DNA helicase PIF1-like
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clep03032
]
143470346
03029 Mitochondrial biogenesis [BR:
clep03029
]
143470346
Enzymes [BR:
clep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
143470346
DNA replication proteins [BR:
clep03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
143470346
Mitochondrial biogenesis [BR:
clep03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
143470346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
PH_LRR1
Pif1_2B_dom
AAA_19
AAA_30
ABC_tran
Viral_helicase1
DEAD
AAA_7
UvrD_C_2
PhoH
AAA_16
AAA_22
Herpes_Helicase
AAA_5
AAA_29
Mg_chelatase
nSTAND_NTPase5
nSTAND3
T2SSE
AAA_24
NPHP3_N
SH3_13
NACHT
AAA_25
Motif
Other DBs
NCBI-GeneID:
143470346
NCBI-ProteinID:
XP_076824525
LinkDB
All DBs
Position
9:complement(3554656..3558514)
Genome browser
AA seq
622 aa
AA seq
DB search
MDNCSELSLNCHVHIENLNERQEIVKRQKYLKASLSLWRNEFREIVILLTKSAKLEPLKY
VLQDVKIHSKFMKEGKSTLILANHNVRLLLSNCPPADLKRFFQVLSVKLANFKVNGKVSQ
RKKLLAGLPKAFEEISPINEKDINTVNNMRKENEIKINEKAAGGKRKQPFSDQTNMTSGS
KQTANVPPSKKRMLVLPTDNLSIEQKHVLKMIKRGKNVFLTGSAGTGKSFLLRHIIGMLP
PSHTAVIASTGVAACHIGGMTLHSFVGIKESMPFNQAITCVRNHKVVARQWKTCKHLIID
EISMIDADFFDCIEAIARAVRGSTDPFGGIQLIICGDFFQLPPVSKSTVKKKFCFQAKSW
QKCIEYNWELHKIYRQTDDRLIQVLQDIRIGKCDPKSIALLKATASNKTEHNGITATKLC
THIKTVKQTNEYYLHQLSGDSKTFQAIDSSTAFSSILDKLLPDTQSIELKVGAQVMLTKN
IDVTNGLVNGARGIVVSFTNTEVRIPVIRFLSGPEKAIKYESYSLKISSDITAFRKQLPL
KLAWAISIHKSQGMSLDCVEMSLSRVFENGQAYVALSRAKSLKGLRVLDFNASCVRSSVD
VLRFYRHLRMQQKCEIRAIQSF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggataactgcagcgaactatcattgaactgtcatgttcatattgaaaatttaaacgaa
cggcaagaaatcgtaaaaaggcaaaaatatttaaaagcaagtctttctctatggcgcaat
gaatttcgtgaaattgtcattcttcttacaaagtcagcaaaactagaacctttgaaatac
gtcctgcaggatgtcaagattcactcaaaatttatgaaagaaggtaaaagcacactgatt
ctggccaatcataacgtgaggttgcttctgtcaaattgccctcctgcagatttgaaacgc
ttcttccaagttctttccgttaagttggcaaattttaaggtcaatggaaaagtctcacaa
aggaaaaaacttcttgctggtttgccaaaagcatttgaggaaatcagtccaataaatgaa
aaagatatcaatactgttaacaatatgcggaaagaaaatgaaataaagataaacgagaaa
gcagctggtgggaaaagaaaacaacctttttcagatcaaacgaacatgacttctggtagc
aagcagacagccaatgtgccacccagcaagaagcgcatgttagtactgcccacagacaac
cttagcattgaacagaagcatgtcctcaaaatgattaaaagaggcaagaatgtttttctc
actggtagtgctggcaccgggaagtcctttttgctgcgtcatattatcggaatgttaccg
ccatctcatacagctgttatcgccagtacaggagttgcagcttgtcacattggtggcatg
acattacactcatttgttggcatcaaggaatctatgccatttaatcaagccatcacctgc
gttcgtaatcacaaggtagttgcaaggcaatggaagacatgcaaacatttgatcattgat
gaaatatccatgattgatgccgatttttttgattgcatcgaagccatagcaagagcagtt
cgtggtagcactgatccatttggtggaattcaactgataatatgtggggacttttttcag
cttcctccagtgtcaaaaagcactgttaagaagaaattttgctttcaggcgaaatcctgg
cagaaatgcattgagtataactgggagctgcacaagatttatcgccagacagatgacaga
cttattcaagtcttgcaagacattcgtattggaaaatgtgaccctaaatcaattgcactg
ctaaaggctacagcttccaataaaaccgaacataatggcatcacagcaacaaaactttgc
acccacattaaaactgttaagcagaccaatgaatattatttacatcagctttctggtgac
tcaaagacttttcaagcaattgacagttcaactgctttctcttcaatattagacaaactt
ttgccagatacgcaatccattgagcttaaagttggtgctcaagtaatgttaacaaaaaat
atagacgtcactaatggtttggttaatggtgctcgaggaattgttgtttcttttacaaac
acggaggtacgaattccagttattcgcttcctgtctggtccagaaaaagcgataaaatat
gagagttattctttaaaaatttccagtgacatcactgcttttcggaaacaacttccactg
aagcttgcatgggcaatctcaattcataaaagtcaaggaatgtcccttgattgtgttgaa
atgtctctttcaagggtgtttgaaaacggtcaggcatacgtagccctgtcccgtgcaaaa
tctttgaaaggtttacgtgtgcttgactttaatgcatcttgcgtacgatcaagtgttgat
gttttacgtttttatcgtcatcttcgcatgcaacagaaatgtgaaattcgagcgattcag
tcattttga
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