Clavelina lepadiformis (light-bulb sea squirt): 143470977
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Entry
143470977 CDS
T11416
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
143470977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clep03041
]
143470977
Spliceosome [BR:
clep03041
]
Complex B
Other components
Prp19-related factors
143470977
Complex C
143470977
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
RRM_YTH1
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
RRM_occluded
zf-CCCH_4
RRM_3
zf-CCCH_3
zf-CCCH_10
zf-CCCH_12
RRM_7
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
143470977
NCBI-ProteinID:
XP_076825399
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All DBs
Position
1:26030983..26036176
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AA seq
419 aa
AA seq
DB search
MATSLGANRYNRQNWEESDFPILCQTCLGDNPYIRMTKEKFGKECKICDRPFTVFRWCPG
ARMRFKKTEVCQTCAKLKNICQTCLLDLEYGLPIQTRDFALGLQNQDIPRSDVNKEYYTQ
NMEREIANTDGTVAVGSVGKAQAPSDILVRMARTTPYYKRNRPHICSFWVKGECKRGEEC
PYRHEKPTDPDDPLSDQNIKDRYYGINDPVADKLLRRANESIDQEAVKPPEDRTISTLYI
GGLGEAIDEDDLRNHFYQFGEIRSINVVGKQNCAFVQFTKRSEAEHAAQKSAGRLLLKGK
RLVVRWGKSQQSGRKDGGDKGESSKGQQFDPVPGLPGALPMPSAVGGGPGHYYGNQQQKN
YLEPPPPGTVPMPGQDGGVMGVVPPTIAPPVMMMPPGYPGPAPNMPVHYPSQNPHRMGS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtctttgggcgcaaatcgttacaatcgtcaaaattgggaagaatcagacttc
cctattctttgccaaacttgcttgggtgacaacccttatattaggatgactaaggaaaaa
tttggcaaggaatgcaagatttgcgatcgtcctttcacagtttttcgttggtgtccgggt
gcgagaatgagatttaagaagactgaagtttgccagacgtgtgcaaagcttaaaaacatc
tgtcaaacttgcttgcttgatcttgaatatggtttaccaatccagacaagagacttcgca
ttgggactacaaaaccaagacattcctagatctgatgtaaacaaggaatattacacgcaa
aatatggagagagaaatagcaaacacagatggaactgttgccgttggttcggttggaaaa
gcacaagcacctagtgatatcttggttcgtatggcacgcacaaccccttattacaaaaga
aatcgcccccatatttgctcattctgggtgaaaggcgagtgcaagcgtggtgaagaatgc
ccgtacaggcacgaaaagccaacagatcccgatgatccactttcagatcagaacatcaaa
gatcgatattatgggataaatgatccggttgcggataagttacttcgaagagcaaatgaa
tcgatcgatcaggaggcagttaaacctccggaagaccgaacgatctctacgctatatatc
gggggcctcggtgaagcaattgatgaggacgacttaagaaatcacttctaccaatttggt
gaaatccgttcaattaacgtagtgggcaagcagaactgtgcgttcgttcaatttacaaaa
cgcagtgaggcagagcatgcagctcaaaagagtgcaggaagattgttactgaaggggaaa
agattagttgtgagatgggggaagtcccagcagtctggtaggaaagatggtggggataaa
ggtgaatcgtccaagggacaacaatttgatcctgttcctggtctcccaggagctttacca
atgccgtccgctgtcggcggcggaccgggacattactatggcaaccagcaacaaaagaac
tacttggagcccccaccccctggcacggtgccaatgccaggccaagatggtggtgtgatg
ggtgtggtaccccctaccattgccccgccggttatgatgatgccacctggttacccaggc
ccagctccaaacatgccagtacactacccatcgcagaacccgcatagaatgggctcctag
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