Clavelina lepadiformis (light-bulb sea squirt): 143471023
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Entry
143471023 CDS
T11416
Name
(RefSeq) uncharacterized protein LOC143471023
KO
K14407
cleavage stimulation factor subunit 2
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
143471023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143471023
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
143471023
U7-dependent histone pre-mRNA processing factors
143471023
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Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_10
RRM_7
RRM_Rrp7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
143471023
NCBI-ProteinID:
XP_076825461
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Position
9:5409980..5419625
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AA seq
447 aa
AA seq
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MMNPRDRDPVDYERSVRSVFVGNIPYEASEEQLKDIFNEVGTVVSFRLVFDRESGKPKGY
GFAEYQDQETAMSAMRNLNGRELHGRSLRVDHATSEKNRNNFQEEVDNFRAMGPPTESEY
GEPTTSQDAPEAISKAVASLPPEQMFELMKQMKQCIQNNPVEARNMLLQNPQLAYALLQA
QVVMRIVDPEIAMKMLHRQNPVQPLIPAGDVPPRDLSRDTRANGSSLPGLGGFSGERSMR
EDSHGRDLPMDMDRGERLPPRRMDVDPPNVERIPVDQGMKDPLDRHVDRHLPPHMEHQRS
RSPPRFHRGTEPRDMGYQDRGPPMDRGPPMDHVLPRDMDRGRPVEHGRSSVDRGMSPRDL
PGGPPMERRGLLERPGHVDPRGSTPIDQNDPRRGRARDEPPTNDQDQEKAALIMQVLQLT
PEQIKMLPEEQRRSILALKDQLQGGRS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacccaagagacagagatccagtagattatgaacgatctgttcgttcagttttt
gtgggaaatatcccttatgaagcaagtgaagagcagctaaaagatatttttaatgaagtc
ggcactgttgttagcttccggcttgtttttgaccgggaatctggaaaacctaagggatat
gggtttgctgaatatcaggaccaagaaacagctatgagcgccatgagaaatttaaatggt
cgagaactacatgggcgttctttgagagttgatcatgcaaccagtgaaaagaatagaaat
aattttcaggaggaagttgataatttccgtgcaatggggccacctacagaatccgaatat
ggggaacccacaacatcccaagatgctccagaagcaattagcaaagctgttgctagtctt
ccacctgaacagatgtttgagttgatgaagcaaatgaagcaatgtattcaaaacaatcct
gttgaagctcgcaatatgctcctgcaaaatcctcagcttgcatatgcacttttgcaagca
caagtggttatgagaattgtggacccagaaatcgctatgaaaatgttacatcgtcaaaat
cctgttcagccactgattcctgctggggatgtgcctccaagggatctaagtcgagatacg
agagcaaatggcagttcattgcctggacttggaggattctctggagaaaggtccatgagg
gaagatagccatggcagagatctgccaatggatatggacaggggtgaaagattaccacca
aggagaatggatgttgacccacctaatgttgagcgtatcccagtggatcagggtatgaag
gacccacttgatagacatgtggatcgccatcttccaccacatatggaacatcagcgatct
agaagtccaccaagatttcatagaggcactgaaccaagagatatgggatatcaagatagg
ggaccaccgatggaccggggacctccaatggatcatgttctgccaagagatatggacagg
ggaagaccagtagaacatggtagatcttccgtggatcgaggaatgtcaccaagagatctt
ccaggtggtccaccaatggaaagaagaggtttgttggaacgccctggtcatgtggatcca
cgtggcagtactcctattgatcagaatgatccaagaagaggaagagctagggatgaacct
ccaactaatgatcaagaccaagaaaaagcggccttgatcatgcaggttctgcagttgact
ccagaacaaataaagatgcttcctgaagagcagcgacgcagcatacttgctctgaaagac
cagctgcagggaggtagatcataa
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