Clavelina lepadiformis (light-bulb sea squirt): 143471355
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Entry
143471355 CDS
T11416
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143471355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clep03019
]
143471355
Enzymes [BR:
clep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
143471355
Messenger RNA biogenesis [BR:
clep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143471355
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143471355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
143471355
NCBI-ProteinID:
XP_076825927
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Position
9:complement(13314275..13331277)
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AA seq
655 aa
AA seq
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MQLKPMPKDETKHRHGRRKTHIMSQEEAKSGKESHWEELEITGTIRNLSPALWQLTHLTV
LFLNDNQLTRIPPDVSRLQNLHCLDLSSNKLRSLPAELGDLIELRELMLNHNSLRVLPYE
LGKLFQLQLLGLNGNPLQPDIQNLYKTGPCRLLTYLLDNLAVTTPEPPEREWVHASDPER
TQPMAIFSVMSYNVLCDKYATRQLYGYCPPWALNWEYRRKTIMREILYYSADIVALQEVE
TCEYHSLFVPEMKLNGYEGIFNPKSRAKHMGEDDKQHVDGCAIFWKVSKFTLVKEYLVEF
NQVAMQNNEGSEDMLNRVMTKDNIGIAALLETNDGLYENAGFRSAGDHSKQLVLAANAHM
HWDPEFSDVKLIQTVMLCHELKRICDEASQSFRPGGRTSAGPSECHKMPLVLCGDFNSLP
DSGVTEFLQRGKVSSTHQDFKEIKYSKCLSAFGNGLRTNGTIQFDPKSITHPFRLNSCYN
ESNYHLLQYSNHTYDFKGIIDYIFYSRTQLKCLGVLGGIDRHWFKINNIVGCPHPHVPSD
HIPVVTEFQLLPQGFQQTPNNHPLLSQNGNLYNNHPHPYSLFTQPSSFPPSTSSSLSSNG
FQPPQQQNRFPAVGRPGSANSLNNSPINIPNGTGGSMPHMGGMGMLGGMGLNGRR
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgaaaccaatgccgaaagatgaaacaaaacatcgccatgggcgccgaaagacg
cacattatgtcgcaggaggaggcaaaatcagggaaggaatcacattgggaagagctggaa
ataacagggaccattcgtaatttgtctccagctctctggcaactcacgcacctcactgtc
ttgtttcttaatgacaaccaattgaccaggataccaccagatgtaagccgtttgcagaat
cttcattgccttgacttgtcttccaataagctgcgtagtttgcctgccgagttgggtgac
ctcattgagctcagggagttgatgctgaatcacaacagtcttcgagtcctcccctacgag
ctcggcaaactctttcaattgcagttgctgggacttaatgggaatcctttgcagcctgac
atacagaatttgtataagactggaccttgtcgacttttaacttatctccttgataatctt
gctgtgaccactccagaacccccagaaagggaatgggtgcatgcctccgaccccgaaagg
acgcaacctatggcaattttttccgtaatgtcctacaatgtcctttgtgacaaatatgcc
actcgacagctttacggatattgtccaccttgggcgctgaactgggagtatcggagaaag
accattatgagggagattttgtactactctgccgacattgtagcactacaggaggttgaa
acatgcgagtatcatagtctgtttgtcccggagatgaaactaaatgggtacgagggaata
tttaaccccaagtcacgggccaagcatatgggtgaagacgacaagcagcacgtagatggc
tgtgcaatcttctggaaagtatccaaattcactctcgtaaaggaatatctggtggagttt
aatcaggtcgcaatgcagaataacgaagggtctgaggacatgttaaatagggtcatgact
aaggataacatcggaattgcagctctgttagaaactaacgatggtctttatgaaaatgca
ggttttcgaagtgccggcgaccattccaaacagctcgtgcttgctgcaaatgcccacatg
cattgggatcccgagttcagcgacgtgaaactcatccagaccgtaatgttgtgtcatgag
ttaaagagaatctgcgatgaggcgagccagagcttccggcctggagggaggacttccgcc
ggaccctcggagtgccacaagatgccgctcgtcctctgcggagattttaactcgcttccc
gactccggggtaaccgagttcctacagaggggtaaggtgtcgtcgactcatcaggatttt
aaggaaatcaagtacagcaaatgcctgagtgcgtttggcaatgggctacggacgaatgga
accatacagtttgaccccaagtcgatcactcaccctttccggttgaattcatgctacaac
gaaagcaactaccacttactacaatactccaatcacacctacgactttaagggcatcatc
gactacattttttattctcgaacccagctcaaatgtctcggggttttggggggaatagac
cgccattggttcaagatcaacaacatcgtcggctgtccccaccctcacgtgccctccgac
cacattcctgtggtgacggagttccaactcctgccccaggggttccagcagacccctaat
aatcatccactcctctcccagaacggaaacttgtacaataaccacccgcacccgtacagc
ctcttcacccagccttccagtttccctccatcgacgagttcttcgctttcatcgaacggc
ttccaaccgccgcaacagcagaaccgatttcccgccgtcggccgtcccgggtcggctaat
tccctgaataacagccccatcaacatccccaacggtaccggcggttccatgccccacatg
ggcggcatgggaatgttaggaggcatggggttaaacggaagaaggtag
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