Clavelina lepadiformis (light-bulb sea squirt): 143471375
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Entry
143471375 CDS
T11416
Name
(RefSeq) uncharacterized protein LOC143471375
KO
K19719
collagen type II alpha
Organism
clep Clavelina lepadiformis (light-bulb sea squirt)
Pathway
clep04512
ECM-receptor interaction
clep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
clep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
143471375
04518 Integrin signaling
143471375
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clep00536
]
143471375
Glycosaminoglycan binding proteins [BR:
clep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
143471375
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
143471375
NCBI-ProteinID:
XP_076825953
LinkDB
All DBs
Position
9:<9709200..9724688
Genome browser
AA seq
1384 aa
AA seq
DB search
ITKALKGQKGEPGEVADDGKEGPRGLPGPPGFAGPEGPDGSAGPAGPKGDRGPRGRDGNS
GVPGPPGPPGPAGQSGDGGYLPSGQKGPSGVIAGQPGSMGPRGLPGPSGTSGPQGFQGPP
GVSGETGPMGPPGQMGPSGLPGKDGKDGTDGKSGKTGSIGTPGPMGPRGFAGTPGVPGAK
GHRGLSGTNGEKGEAGVAGEGGEQGAEGEPGPAGLQGPRGLPGDRGRPGSVGAPGSRGSD
GLSGQSGPPGPTGNAGPPGFPGAPGSKGEGGPTGSRGPEGPQGSRGESGTPGPPGPAGLA
GASGVDGMPGHKGSTGASGVAGPSGMPGPRGSPGPQGNIGSPGTKGNQGNPGQTGYKGDQ
GPKGSQGSVGPQGLQGSQGEEGNRGPRGEIGPAGPLGPTGERGATGNRGFPGSDGLPGPK
GGTGRRGKPGFGGPKGSTGDPGRAGEPGLPGARGLTGKPGAEGRQGNQGPAGVPGDDGRS
GPSGPPGQKGPAGSIGFPGVKGSRGESGKTGEKGISGPPGLRGAPGKDGESGSQGPSGPA
GVAGERGEPGQPGPTGFQGMPGPPGPNGEPGKPGEIGVPGEVGPSGESGSRGERGFPGEV
GPAGSQGLPGTRGVPGIPGSDGQKGQMGPLGQPGEMGPRGAQGVMGSRGPSGLPGSKGDQ
GDTGPTGSEGEPGKEGLRGLTGPIGPPGPQGLNGIKGDFGATGEVGPSGPRGSTGERGDQ
GLEGPPGFPGAPGTEGQPGKKGEGGPRGVKGEGGQPGPQGPAGSNGPPGPLGLTGRKGTR
GSLGPPGPSGFPGPAGRPGPGGDQGSPGQQGNSGEPGKPGSKGARGDLGPAGIQGEPGIR
GINGQPGEPGPSGELGPQGAPGASGFTGNPGSPGNPGLPGPQGGQGERGPSGLPGEEGKQ
GRSGLPGERGAPGDIGPVGPIGPPGEFGPEGVQGREGTPGRDGQSGIKGEMGPLGHSGPP
GGPGMPGPPGLTGIEGKSGPRGDSGPPGTQGPPGPEGGRGVSGPQGLRGDKGSGGETGPM
GQKGHRGFSGLQGLPGPPGPQGDGGAVGQVGPQGLRGSTGPRGIPGKDGNHGPSGPMGPS
GPRGSSGEDGMKGPAGQPGLPGPPGPPGSGVDLAAFRMPAFSYKGPSVSDQPVNDDAAIE
RDNEMMLALKELTSSVETLKAPRGADRKSPARSCMDIYLAETQQGIVPKDGVRWIDPNGG
CTADGIEVYCNFNTLETCVYPTQRSIANGTHYSADELNGGYLYYGQARTGRPISYDPPLE
SRVEHADYRTQLTFLRLLSNSAKQRVTFYCRNMVAYHNDITDSKDQAVKLRGYGDTEFTA
EGRSRNTYSVLQDGCAGRPTSWGKTIIEYETEKVARMPITDIAPLDVGGSDQEFGVEFGP
VCFK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
attactaaggcactgaaaggacagaaaggtgaacctggagaagttgctgatgatgggaaa
gaaggaccacgtgggttaccagggcctccgggctttgctggaccagaaggacccgatgga
tcagctggacctgcaggaccaaaaggtgacagaggcccacgaggacgagatggcaattca
ggtgtgccgggtccacctggaccgcctggacctgctggacaaagtggtgatggagggtat
ttgccatctggacaaaagggaccatctggtgttatagctggacaaccgggatctatggga
ccaagaggtttacctggtccatctggaacatcaggcccacaaggtttccaaggtccacct
ggagtatctggagagactggaccaatgggaccacctggtcaaatgggcccatctggcttg
cctggaaaggatggaaaagatggtacagatggaaaatcaggaaaaactggaagtattggg
actcctggaccaatgggacctcgaggatttgctggaacacctggtgtacctggtgcaaag
ggtcataggggcctttctggtaccaatggagagaagggagaagccggtgttgctggtgaa
ggaggagaacaaggtgcagagggagaacctggacctgcaggtttacagggtccaagaggt
ttacctggcgatagaggacgacctggttcagtcggagcacccggatcaagaggttctgat
ggcctttcaggacaatccggacctccaggtccgacaggaaatgctggaccacctggtttt
ccaggagctcctggatccaaaggagaaggtggtccaacaggcagtcgtggtcctgaaggc
ccgcagggttctcgtggagaatctggcactcctggaccacccggtccagctggattagct
ggagcctctggtgttgatggaatgcctggacacaaaggttcaacgggtgcatctggtgtc
gccggaccatccggaatgcctgggcctcgtggatctcctggtccacaaggaaacattggt
agccctggaacaaagggaaatcagggaaatcctggccaaacaggatataaaggagatcaa
ggtcccaaagggtcacagggttcagttggaccgcaaggtctgcagggatcgcaaggtgaa
gaaggaaatagaggtcccagaggagaaattgggccagccggtccacttggaccaactggt
gaacggggtgcaactggtaacagagggttccccggttctgatggtttaccaggacctaag
ggtggcaccggtagaagaggtaaaccaggttttggtggacctaagggttctactggagac
ccaggtcgtgctggtgaaccgggtcttcccggtgctaggggcttaacaggaaaaccaggt
gctgagggacgtcagggcaatcaaggtcctgcaggcgtacctggagatgatggccgatca
ggaccctctggtccaccaggacagaagggtccagcaggttcaattggtttcccaggtgtc
aaaggatctaggggagaaagtggtaaaactggagagaagggaatttcaggaccgcctgga
ttgcgtggtgcacctggcaaggatggagaaagtggctcacaaggtccatcaggacctgct
ggtgttgctggtgaacgcggtgaacctggtcaacccggcccaacaggatttcaaggaatg
ccaggacctcccggaccaaatggtgaaccaggaaaaccgggtgaaattggtgtacctgga
gaagtgggaccatcaggtgagtcaggttctcgtggtgaacgtggcttccctggtgaagtt
gggcctgcaggctcgcaaggtcttcctggaactagaggtgtgcccggcatccctgggagt
gatggacaaaagggtcaaatgggaccactaggacaacctggtgaaatgggaccacgtggt
gcacaaggtgtgatgggaagtcgtggaccttcaggtcttcctggctccaaaggcgaccag
ggtgatacgggaccaactggatctgaaggtgaaccaggaaaggaaggtttaagagggctg
actggaccaattggcccacctggaccacagggattaaatggaattaagggtgactttggt
gctactggtgaagtcggcccaagtggacctcgaggttcaactggagaacgaggtgatcaa
ggattggaagggcccccagggtttccaggagctccgggtactgaaggtcaaccaggcaag
aagggtgagggcggtcctcgtggtgttaaaggagaaggtggccagcctggaccccaggga
ccagccggttccaatggaccacctggtcctcttggtttgactggtagaaaaggaacacgt
ggatcacttgggccacccggtccgtctggatttccgggaccagcagggcgaccgggccca
ggaggagatcagggaagcccaggccagcaaggtaattctggagaacctggtaaacctgga
tccaaaggagctcgtggtgatttaggtcctgctggaattcaaggagagccaggcatacga
ggtattaatggacagcctggagaacctgggccctcaggtgaactgggaccacaaggtgca
cctggtgcttctggatttactggaaaccctggttctcctggcaacccggggttacctgga
ccgcaaggaggtcaaggggaacggggaccatctggcttacctggagaagaaggtaaacaa
ggtagatctggtttgccaggagaacgtggtgctcctggagacattggccctgttgggccg
attggaccaccaggagaatttggaccagaaggggtccaaggtcgagaaggtacccctggt
cgtgatggacagtcaggaattaagggagaaatgggacctcttggtcacagcggcccacct
ggtggacccggtatgcctggaccacctggtcttactggaattgaaggaaaaagtggacca
cgtggtgattctggcccaccaggtacacaaggaccacctggacctgagggaggacgtggt
gtatcaggaccacaaggtttacgaggagacaagggttcgggtggagaaacgggacccatg
ggacaaaagggacatcgtggtttcagcggtctgcagggtttaccaggtccaccaggtcca
cagggagatggaggagctgttggacaggttggaccacaaggtcttagggggtcaactggg
cccagaggtattcccggaaaagacggcaatcatggaccatctggtccaatgggtccaagt
ggaccacgtggctcgtctggtgaagacggaatgaagggccctgctggacaaccagggctc
cctggaccacccggaccacctggaagcggagtcgatcttgcagctttcaggatgccggcc
ttttcttacaaagggcctagtgtttcagatcaaccagtcaacgacgatgcagctattgag
cgcgataacgagatgatgttggctctgaaagaactgacatcctctgtagagaccttgaag
gcaccaagaggagcagaccgaaagtcgcctgcccgctcttgtatggacatctatttggct
gagacacagcagggaattgtaccaaaggacggcgtgcgatggattgatcccaatgggggt
tgcactgctgatggcatcgaagtttactgcaacttcaacaccttggagacttgtgtgtat
cctactcagcgatcaattgcaaacggaactcactatagcgctgatgaactaaatggcggc
tatctctattacggccaagcgagaactggccggccgatctcttatgatccaccgctagaa
agcagagtcgaacacgccgattatcgaactcaacttaccttcttacgccttctcagcaat
agcgccaaacagcgcgttactttctactgccgtaacatggtcgcttatcacaatgacatc
actgatagcaaggatcaagcagtaaaactgagaggttatggggacactgagtttacggca
gaagggaggtcaaggaatacatacagcgttcttcaagatggctgtgcgggccgacctacg
tcatggggcaagaccattattgagtacgaaacagagaaagttgcacgcatgcctatcacc
gatattgcgcctttggatgttggtggatcggatcaggaatttggggtcgagtttggcccg
gtttgcttcaagtaa
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